BAC Information

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BAC

Clone NameMSMg01-126H02
Chromosome7 (Build37)
Map Location 72,601,973 - 72,602,555
singlet/doubletsinglet
Overlap genenone
Upstream geneApba2, 5730507A09Rik, Ndnl2, Tjp1
Downstream geneGm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H02.T7 (MSMg01no126_h02.b1)MSMg01-126H02.TJ (MSMg01no126_h02.g1)
ACCAG335256AG335257
length894692
length of high quality
(start - end)
---605 (73 - 677)
definitionCHROMAT_FILE: MSMg01no126_h02.b1 PHD_FILE: MSMg01no126_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:50 2005CHROMAT_FILE: MSMg01no126_h02.g1 PHD_FILE: MSMg01no126_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATATTTTTTTTTTTTTTTTTTTATATATATATCNTATAACAANNNNC
NTCACCCCTNCCCNTNCCCCTTNTTATTTTTTTTNCTTTTTTTTTTTTTT
TATTTTATTCTTTTTTTCTTTCCCCTTTTCCGCCCCCCCCCNNTCCCCNC
CCCCCCCCCCCCTCCCCCTTCGTCTTCCCTTTTATCTCTTTATATTTTTT
CATACACTTTACTTTCGCGTTCAAGGCTCCCGCTTTCTCTTTTCCCTTTC
ACCGTTTTCCCTTTTACCTTTTAAACTGCTTTCGGATGTTACAGTTGCGA
GCCCGACACTGCGGGCCGGCGGGCGTCCGTCACCAATAGTAGANTGATAG
ATACACCAATAATAATATTAAAACCGTCGTTCCTTATATTTAATTTACGT
CCGTCCGTGCTGTCCTTTCCTTCTTTTCACGCCTTTCTCTCGAATTTTCT
TCCCTTCTACCTCTTCTTTATAACACAATGTCTTCATGCTCCCTATTAAT
CCCATATCATTATCCTAGCTCCCATTACAACACAATATATACAACAATAC
TAACCTAAACCCAATATATAAATAAACATCAAACCGCAGATAATAGTGAC
GATGGATGAGGAGATATTTACCACGGGGGGCGGGATTTACCAAAGCGGAG
AATGGCGGGGATAACGCAAAGGACCAAGTAAGAAGAAGGAAGGGTGGCGG
ATTATAAGGAGCAAGCTGGGGACGTAATAGGAGAATGAGGGACGAACTAT
ACGAGCTTAGTGTGCGTGACCGGGTAGGTTATGTACGGCGCGGATTACAG
CGATCTCTCTCCCACGAAAACAGCCAATATACCAGCTGATAATAAGCCCA
CAATGCGTACCATATGGAGCGTGGCGTGAATAAGACCAGGAGGG
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAACCACCTTTCTTACGTGTATCTTTCC
CATAGTTGGTAGCATTCGGCCAGGCACAGCTCCTGTGTCCAGAGCCTGAG
TCTTCCTCAGGGCAGCAGGTGAACACCTGGTTAATGACGGTCATCAGAAG
GTGTGCGTTGACTATGAGCATGGACCTCTCTCATGCTCTTTCCGGCTTTT
CCTAACAGTCGTGATAGAAACCAAAGCTCACTGCCCCAGACTCTGGAGCT
TAAGCAGGGACACTGTACTGTATGCGGGCTCCGAGGCTAGATCATTGGCT
CAGACTCTCAATGGCAGTAGGCTGATTTGAATGCATGCAGACAGGATCCA
TGAGCCACCACTGCAGCAAATATATTGTCAGGGGACGTAGCTTGAGCTTC
ACCATTTCTTTATCGATCTCCATTCTTTTCAAGACCTTGTGAAAGCAACA
GCCAGTGACCAGAACAAAGTTACCCTGTTCTAACAGGCGTAGCACCTCAT
TAGAGTGTGCTTTCTGGTCTCTTGGGGGCTCATAGCTCATAGCTCAGCAG
TCTCCTACCCTCACTGCATGTAACTGGTGCTAGCTAAAGGATTTATGCCC
GATGCTTGGCTTCACCTTTTGCTGACGATGTGTTTTCTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h02.g1 MSMg01no126_h02.g1 CHROMAT_FILE:
MSMg01no126_h02.g1 PHD_FILE: MSMg01no126_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:50 2005
         (605 letters)



>mm_chr7_72601551_72602555
          Length = 1005

 Score =  969 bits (501), Expect = 0.0
 Identities = 554/583 (95%), Gaps = 19/583 (3%)
 Strand = Plus / Minus

                                                                        
Query: 42   attcggccaggcacagctcctgtgtccagagcctgagtcttcctc-agggcagcaggtga 100
            |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||
Sbjct: 1005 attcggccaggcgcagctcctgtgtccagagcctgagtcttcctcgggggcagcagatga 946

                                                                        
Query: 101  acacctggttaatgacggtcatcagaaggtgtgcgttgactatgagcatggacctctctc 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  acacctggttaatgacggtcatcagaaggtgtgcgttgactatgagcatggacctctctc 886

                                                                        
Query: 161  atgctctttccggcttttcctaacagtcgtgatagaaaccaaagctcactgccccagact 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  atgctctttccggcttttcctaacagtcgtgatagaaaccaaagctcactgccccagact 826

                                                                        
Query: 221  ct------------------ggagcttaagcagggacactgtactgtatgcgggctccga 262
            ||                  ||||||||||| |||||||||||||||||| |||||||||
Sbjct: 825  ctgggctctgggctcacttaggagcttaagcggggacactgtactgtatgtgggctccga 766

                                                                        
Query: 263  ggctagatcattggctcagactctcaatggcagtaggctgatttgaatgcatgcagacag 322
            ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct: 765  ggctagatcattggctcagactctcaatggcggtaggctgatttgaacgcatgcagacgg 706

                                                                        
Query: 323  gatccatgagccaccactgcagcaaatatattgtcaggggacgtagcttgagcttcacca 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  gatccatgagccaccactgcagcaaatatattgtcaggggacgtagcttgagcttcacca 646

                                                                        
Query: 383  tttctttatcgatctccattcttttcaagaccttgtgaaagcaacagccagtgaccagaa 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  tttctttatcgatctccattcttttcaagaccttgtgaaagcaacagccagtgaccagaa 586

                                                                        
Query: 443  caaagttaccctgttctaacaggcgtagcacctcattagagtgtgctttctggtctcttg 502
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  caaagttaccctgttctatcaggcgtagcacctcattagagtgtgctttctggtctcttg 526

                                                                        
Query: 503  ggggctcatagctcatagctcagcagtctcctaccctcactgcatgtaactggtgctagc 562
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  agggctcatagctcatagctcagcagtctcctaccctcactgcatgtaactggtgctagc 466

                                                       
Query: 563  taaaggatttatgcccgatgcttggcttcaccttttgctgacg 605
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465  taaaggatttatgcccgatgcttggcttcaccttttgctgacg 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)