BAC Information

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BAC

Clone NameMSMg01-126K22
Chromosome7 (Build37)
Map Location 83,612,985 - 83,613,437
singlet/doubletsinglet
Overlap geneEG244071
Upstream geneAkap13, Klhl25, LOC100042210, LOC434200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126K22.T7 (MSMg01no126_k22.b1)MSMg01-126K22.TJ (MSMg01no126_k22.g1)
ACCAG335433AG335434
length710701
length of high quality
(start - end)
566 (42 - 607)74 (171 - 244)
definitionCHROMAT_FILE: MSMg01no126_k22.b1 PHD_FILE: MSMg01no126_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:10 2005CHROMAT_FILE: MSMg01no126_k22.g1 PHD_FILE: MSMg01no126_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGAGATCCAGGAATGGCTGAGAAGCACCTGAAAAAATGCTCAGCA
TCCTTAATCATTAGGTAACTGCAAATCAAAACAAACCTGAGATTCCATCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGAGGATGTGGAGAAAGAGGAACACTCAGTTTGCTTTCTTATAGAACC
CAAGACTACCAGCCCAGGGATGGCACCACCTACAATGGACCCTTCCATCC
TTGATCACTAATTGAGAAAAAGCCTTTCAGCTGCATCTCATGGAGGCATT
TCTTGTCATGTATTAGTTTAACTTGGGGGTCCACAGTGTCTTCCTAGGTC
ACCACAGATAATGCCCCCTCCTCCCTAGAAATGCCCGTATCTCATGACCT
TGTCACAGTTTCCTCATAAACCCTACAATGGCTCCATGAAAGCACAGACT
GTCTGCTCTAGCTGTCACTATTATATCTTTAGAAAATAGCATCGACCTTG
CAGAAAGTCCTTATTGAACAAAGCCAAGAAATTCTTGTATCCGTTCTTGT
TTCTACTCACCCACAGTAACTTTGACCTCTTTTCTGTTCTTGCAGAGCTG
TCTCTTTCCTTGAGCTTTTTATGGTTCTCCAAGGATAGCTTCTAATGTTC
CCATAGAGCA
CGATGAAGTGGGAGGCCTGGNGGCGCCTGGCTTCGAACCGCGCNGAACTA
TAGAAGGATTGCGGNATTCAGAAGNCAAAACCAAGNCCTGGCAGGGAAGG
NCCTTTTGAAAGTCCCACCCGAGAATCCTTTTTTTTTTTTTTTTTTTTTT
TTTTTACTTCTGTCCTGGGGTTGCCAGAACACACACACACACTCTCTCTC
TCTCTCTTTTTCTCTCTCAATTATGGACTGACTTATTTTCTCTGTGTTTA
CTTTGTTCTCCATGTGTTCTCTTCACATGGGGGTATCAGCCATTAGGTTT
AGGATCCAGAAGGACTTTGCGTACCTTCTCNTAGCCAANCCAACGAACAA
AACCCTCTTTTCACACCCCCATGACATCTTGGATGTATGGATGGAAAAGG
ATTTTGGGGGCAACACTTTCAATTCAACCCACTGTGATAAGTCACCTAGG
AAAAGAGCTTCTGCCTATTTCCCTTCACCCCTGGAGGATACTGAAACTTC
CTGGCCACTGGAACTTCCTGGAGGAGGGCTGAATAATCCAAGCATTCAGA
GTTCATGCACCCTTTTGCAAAACCCTCTAGTAGTTACGCTTCTACTGCGT
ATTGAAAATCATGACCCATTTTATGTGACAACTGAAAAGCCCAAGGCCCC
CTTCGAAGCTCTTTTTTTTTTTGCCGAAACTCGACGTTCCAGCCCTCCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_k22.b1 MSMg01no126_k22.b1 CHROMAT_FILE:
MSMg01no126_k22.b1 PHD_FILE: MSMg01no126_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:10 2005
         (566 letters)



>mm_chr7_83612472_83613437
          Length = 966

 Score =  826 bits (427), Expect = 0.0
 Identities = 447/459 (97%), Gaps = 12/459 (2%)
 Strand = Plus / Minus

                                                                       
Query: 114 ccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgga 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgga 907

                                                                       
Query: 174 gaaagaggaacactcagtttgctttcttatagaacccaagactaccagcccagggatggc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaaagaggaacactcagtttgctttcttatagaacccaagactaccagcccagggatggc 847

                                                                       
Query: 234 accacctacaatggacccttccatcct-tgatcactaattgagaaaaagcctttcagctg 292
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 846 accacctacaatggacccttccatcctat-atcactaattgagaaaaagcctttcagctg 788

                                                                       
Query: 293 catctcatggaggcatttcttgtcatgtattagtttaacttgggggtccacagtgtcttc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 catctcatggaggcatttcttgtcatgtattagtttaacttgggggtccacagtgtcttc 728

                                                                       
Query: 353 ctaggtcaccacagataatg-----ccccctcctccctagaaatgcccgtatctcatgac 407
           ||||||||||||||||||||          ||||||||||||||||||||||||||||||
Sbjct: 727 ctaggtcaccacagataatgttgtt-----tcctccctagaaatgcccgtatctcatgac 673

                                                                       
Query: 408 cttgtcacagtttcctcataaaccctacaatggctccatgaaagcacagactgtctgctc 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cttgtcacagtttcctcataaaccctacaatggctccatgaaagcacagactgtctgctc 613

                                                                       
Query: 468 tagctgtcactattatatctttagaaaatagcatcgaccttgcagaaagtccttattgaa 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tagctgtcactattatatctttagaaaatagcatcgaccttgcagaaagtccttattgaa 553

                                                  
Query: 528 caaagccaagaaattcttgtatccgttcttgtttctact 566
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caaagccaagaaattcttgtatccgttcttgtttctact 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)