BAC Information

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BAC

Clone NameMSMg01-126L11
Chromosome7 (Build37)
Map Location 37,497,415 - 37,497,736
singlet/doubletsinglet
Overlap geneTshz3
Upstream geneDpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneLOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126L11.T7 (MSMg01no126_l11.b1)MSMg01-126L11.TJ (MSMg01no126_l11.g1)
ACCAG335456AG335457
length788698
length of high quality
(start - end)
152 (74 - 225)340 (74 - 413)
definitionCHROMAT_FILE: MSMg01no126_l11.b1 PHD_FILE: MSMg01no126_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:12 2005CHROMAT_FILE: MSMg01no126_l11.g1 PHD_FILE: MSMg01no126_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATATGGATCCGCGGA
ATTCCTAAATCTCCAGGAACCAGGAGCTTCTTGGTGTCAAAATAAAAGTC
TGATCCACGTAAAAGAAATAGCTGAAAGCCAAGGACTCCCATCCTCCTTA
GAGCCAGCTTCAAGCCAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTCTGTGTGTGTGTGTGTGTGCTCGTTTATTTTTTCTCTTCTTTTTTTT
CCTTTTCTCTCTCCTTCACCTTATTTTTCCTCTCCTCCTCCTCCTTTTTT
TTTTTCTCTTCCCCTTTCCTTTTTCTTTTTTTTTTTTTCCCTTTTTCTTC
TTTTCTTTTTTTTTATTTATTTTTTCCTCCCCCTCCTTTTTTTTTTCTAC
TTCTCTTTTCTTTTTTGTTTATTATTTTTTTTTCTCCCCCCCCNTTTCAT
ATTNTTTGTTTTCGTTTCATTTATTTTTCTCTTCTCCTTTTCTTTTTCGT
CACTTTTTTTCTTTATCTTCCTTCTTCCCTTTTTCTTCTCTTTTTCTCCT
CATCCCTTCTTTCTTTCTTATCCTCTATCCATTTTATTCCTTCCTATTAC
TATCTTTTCTTCTTTTTTTCCTATATTCTCTATTTGCTCTTCTCATTCCT
CTACTTCCTTTCCCTCTTTTCTTTTTATCCCTCCTATTTTTACCGTCTTC
CTCTTTATTTCCTCCTTTTATTCATCCTCTTTTTTTCTTTCTTTCTTTAT
TTCCTCCCCTCCTTCCTTCACTCTCTTCTTTTCTTTTG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAACAGCCACTGCTACAGCAAGGGG
GAAAAAAATCTCTGAGCGAAGACGGTGTATACTGCAGAAGACCTGACTGT
GGTTCCCAGCAAGCACTTGCATCTAAGAGATTCGTGCCCAACTGTAACCC
CAGTTCCAAGGAATCAGACACCCTCTTCTGACCTCTACAGTCACCTGTAC
TCACACACACATGCCCACCCGAGACACACAAGCCTAAAACTAAATGAACT
CCCCCACCCCCACACACACACTTCTGGACTCCCTCCAAACAGCTGTATAT
CCTGGGAAAAGAAGCACCTCTCACCTGCTCTGGCCACCAAAGAAACTGCT
CATACCCCGGCACACCACCCTCGGACTTTCCAGCACAGCCAAGTCTGTGC
TAGTGTGTCATGAGCGAGGACTGCTCCACAAGACCCTGAATGTGACAGAC
AACTGGTATGTGGTCAGAAAACTATAGGTCTTTGGCAGTTTCCCAGAATC
ACCTGAGAGCCCAGGAACCCATCATGGAAATGCTGACTCTAAAGCAGAAG
AATCCCTTGCTATCAAAAATCTGGAGGTCAAGTTTCTGATAGAATATCCC
TCCGTCCCCTGTATAAGGGAATTCCCTTTTGGGGCCCCCCAGCGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_l11.g1 MSMg01no126_l11.g1 CHROMAT_FILE:
MSMg01no126_l11.g1 PHD_FILE: MSMg01no126_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:12 2005
         (340 letters)



>mm_chr7_37496994_37497736
          Length = 743

 Score =  561 bits (290), Expect = e-164
 Identities = 313/322 (97%), Gaps = 4/322 (1%)
 Strand = Plus / Minus

                                                                       
Query: 18  cagcaaggggg-aaaaaaatctctgagcgaagacggtgtatactgcagaagacctgactg 76
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cagcaagggggaaaaaaaatccctgagcgaagacggtgtatactgcagaagacctgactg 684

                                                                       
Query: 77  tggttcccagcaagcacttgcatctaagagattcgtgcccaactgtaaccccagttccaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggttcccagcaagcacttgcatctaagagattcgtgcccaactgtaaccccagttccaa 624

                                                                       
Query: 137 ggaatcagacaccctcttctgacctctacagtcacctgtactcacacacacatgcccacc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggaatcagacaccctcttctgacctctacagtcacctgtactcacacacacatgcccacc 564

                                                                       
Query: 197 cgagacacacaagcctaaaactaaatgaactcccccaccccc---acacacacacttctg 253
           |||||||||||||||||||||||||||||||||||| |||||   |||||||||| ||||
Sbjct: 563 cgagacacacaagcctaaaactaaatgaactccccctccccccacacacacacacctctg 504

                                                                       
Query: 254 gactccctccaaacagctgtatatcctgggaaaagaagcacctctcacctgctctggcca 313
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 gactacctccaaacagctgtatatcctgggaaaagaagcacctctcacctgctatggcca 444

                                 
Query: 314 ccaaagaaactgctcatacccc 335
           ||||||||||||||||||||||
Sbjct: 443 ccaaagaaactgctcatacccc 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 743
Length adjustment: 9
Effective length of query: 331
Effective length of database: 734
Effective search space:   242954
Effective search space used:   242954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)