BAC Information

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BAC

Clone NameMSMg01-127A11
Chromosome7 (Build37)
Map Location 115,840,901 - 115,841,468
singlet/doubletsinglet
Overlap genenone
Upstream genePpfibp2, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1
Downstream geneOlfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127A11.T7 (MSMg01no127_a11.b1)MSMg01-127A11.TJ (MSMg01no127_a11.g1)
ACCAG335686AG335687
length708708
length of high quality
(start - end)
569 (43 - 611)516 (72 - 587)
definitionCHROMAT_FILE: MSMg01no127_a11.b1 PHD_FILE: MSMg01no127_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:38 2005CHROMAT_FILE: MSMg01no127_a11.g1 PHD_FILE: MSMg01no127_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTAACTACGAACAGCACTGCCTGTCTCCCAGAAGACCTTCGCTAATC
CAAAAAGACCCAAGCTAGTAAACACCAGAAATAACCAGATGGCAAAAGTC
AAGAACAAGAACATAAGTAACAGAAGCTACTGTAATTTGACACCATCAGA
ACCCAATTCTCCTACCACAGCAAACCCAGGATACCCAAACACACATAGCA
CCATCCCCAAAGGCATTCGCTACTGATGACATGACACACAGTAAAGTCAT
CTGTCTCTACTTCTAGTTATTCTCCATTTTCTGTCTCTTTTTGTCACTGT
CCTCCAGGACAGTGAAAATTTTCTGTGAAATTAATTGTATGGCCTCATTC
ATTCTATCCCCCTACATTCCTTACCAGTCTGCCTAAAGAAAACAATGCAT
GCAAGTTTATTGGTTCTCAGCATTTATCTTTCCTTTTGTAGTCACACAGT
GATTACAAGTATACAAAGCATTTTCTCACTAGGATATTAGTAAATTGAAT
CACAGCCTCCAGCCATTCTTGAGACTCATTCCTTAGGCACAATACTTATT
TTTTCTGGGGAGGTATTTTTATTAAATATTTTCATGCATATATCATTGGG
ATTGACACCACGTCAGGTTATAGAGCACGTCTATTAAAATTATCCACCTA
GCCTCATA
TGCAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGAAACTCACACCATATGTATTCACTGATAAGTGGA
TATTAGCCCCTAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAA
CACATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_a11.b1 MSMg01no127_a11.b1 CHROMAT_FILE:
MSMg01no127_a11.b1 PHD_FILE: MSMg01no127_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:38 2005
         (569 letters)



>mm_chr7_115840700_115841668
          Length = 969

 Score = 1048 bits (542), Expect = 0.0
 Identities = 561/568 (98%), Gaps = 2/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctaactacgaacagcactgcctgtctcccagaagaccttcgctaatccaaaa 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctctaactaggaacagcactgcctgtctcccagaagaccttcgctaatccaaaa 261

                                                                       
Query: 64  a--gacccaagctagtaaacaccagaaataaccagatggcaaaagtcaagaacaagaaca 121
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagacccaagctagtaaacaccagaaataaccagatggcaaaagtcaagaacaagaaca 321

                                                                       
Query: 122 taagtaacagaagctactgtaatttgacaccatcagaacccaattctcctaccacagcaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taagtaacagaagctactgtaatttgacaccatcagaacccaattctcctaccacagcaa 381

                                                                       
Query: 182 acccaggatacccaaacacacatagcaccatccccaaaggcattcgctactgatgacatg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acccaggatacccaaacacacatagcaccatccccaaaggcattcgctactgatgacatg 441

                                                                       
Query: 242 acacacagtaaagtcatctgtctctacttctagttattctccattttctgtctctttttg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acacacagtaaagtcatctgtctctacttctagttattctccattttctgtctctttttg 501

                                                                       
Query: 302 tcactgtcctccaggacagtgaaaattttctgtgaaattaattgtatggcctcattcatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcactgtcctccaggacagtgaaaattttctgtgaaattaattgtatggcctcattcatt 561

                                                                       
Query: 362 ctatccccctacattccttaccagtctgcctaaagaaaacaatgcatgcaagtttattgg 421
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctatccatttacattccttaccagtctgcctaaagaaaacaatgcatgcaagtttattgg 621

                                                                       
Query: 422 ttctcagcatttatctttccttttgtagtcacacagtgattacaagtatacaaagcattt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttctcagcatttatctttccttttgtagtcacacagtgattacaagtatacaaagcattt 681

                                                                       
Query: 482 tctcactaggatattagtaaattgaatcacagcctccagccattcttgagactcattcct 541
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctcactaggatattagcaaattgaatcacagcctccagccattcttgagactcattcct 741

                                       
Query: 542 taggcacaatacttattttttctgggga 569
           ||||||||||||||||||||||||||||
Sbjct: 742 taggcacaatacttattttttctgggga 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)