BAC Information

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BAC

Clone NameMSMg01-128L05
Chromosome7 (Build37)
Map Location 98,070,319 - 98,070,814
singlet/doubletsinglet
Overlap genenone
Upstream genel7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L05.T7 (MSMg01no128_l05.b1)MSMg01-128L05.TJ (MSMg01no128_l05.g1)
ACCAG336901AG336902
length731720
length of high quality
(start - end)
365 (44 - 408)496 (70 - 565)
definitionCHROMAT_FILE: MSMg01no128_l05.b1 PHD_FILE: MSMg01no128_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:53 2005CHROMAT_FILE: MSMg01no128_l05.g1 PHD_FILE: MSMg01no128_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTTTATCTCTGTACTCCATTTTAAAATAGGGTTATTTGGTTCTC
TGGAGTCTAACTTCTTCAGTTCTTTGTATACATTGGATATTAGCCCTCTA
TCAGATGTAGGGTTGGTAAAGATCTTTTCCCAATCTGTGGGTTGATGTTT
TGTCCTACTGACAGTGTCCTTTGCCTTACAGAAGCTTTTCAATTTTATGA
GGTCTCATTTAAGGACTGTTGATCTTAGAGCATGAGCCATTGGTGTTCTG
TTCAGGAAACTTTCTCCTATGCCCATGTGTTTGAGGCCCTTTCCTGTTTT
CTCTTCTACTAGATTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCC
ACCTGGACTTGAGCAGACAGATTTCCTATGTTTATAGACTGGCTATGGCT
GTCTTACTGAAATCTATCATCAGATTTGATCGCTTTGTACCAGGCTATAA
GAATGTATCATTTTGTGTTCTACCTGTCGACTGTCAGGTTATCCTATATC
ATTTTGCTTAAAACGCCGTCTTTTCTTCCACTATATGGTGTCTAGCCCGT
CTAAGATCATGTTGACATTTATGTGTGGTGGCCTCTTTTTTGGTGTCTCC
TTTTCCCCCTCCCTCCCCCCTTTTTCTCTGCCTTTTTTCCACCCTTTTTG
GTCCCTTCTCCCCTATTTGTTATTTAGCCTC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACCCT
GTCTCAAAAAAAAATAATACCAATAAGATTTTTTTGCTTTAGAGTTGGTT
TGAATTTACCTAAAATTAAGAATGTTGAATATCTTTTAATCTACTTAAAA
ACCATTTTTATTGTAGTTGTAAAAACATCTATACAAAATTCTTTCTCCAT
ATCTAATTATTTTATGTTATTGAAATATGAAACTCCTCCTATGTCCTGCC
CAACATCTAACAGGTTTATAATTGTAATATTTTCTGTTCAAGTATCCTCA
TTCTTTAACCATGTATTGCCACTGTTATCTGGACTATGACTTTTAAAAAT
TTTAACAAACCCTAACATAACCTCCTGAAAACACCATTTTAATGAACCTA
TGTGTAACTCAAGGTCACAGAGACTATCTCTGATATTTTCTTCTCAGCAT
TTTACAGCTTTAGCTCTCACATTGTTCCCTCCGATCAATTTGAGCTCATT
TTTGCATGTGGTATGTGCAGATATTTAAGTTCATAGTTTTTCTTGTTGAA
AAAAAGGCTATTCATTCCTCACTGGATTAACTTGGGGACTCCTTTTTTTG
AAAAGATGTTAAGTATGAATTTCTCTTGTGAATTTCATTCCTTTCCTACT
GAATTTGATGTCTCTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l05.g1 MSMg01no128_l05.g1 CHROMAT_FILE:
MSMg01no128_l05.g1 PHD_FILE: MSMg01no128_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:53 2005
         (496 letters)



>mm_chr7_98070118_98071013
          Length = 896

 Score =  899 bits (465), Expect = 0.0
 Identities = 489/497 (98%), Gaps = 2/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtctcaaaaaaaaataataccaataagat 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||
Sbjct: 202 caggacagccagggctacacagagaaaccctgtctc-aaaaaaaataataataataagat 260

                                                                       
Query: 61  ttttttgctttagagttggtttgaatttacctaaaattaagaatgttgaatatcttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttgctttagagttggtttgaatttacctaaaattaagaatgttgaatatcttttaa 320

                                                                       
Query: 121 tctacttaaaaaccatttttattgtagttgtaaaaacatctatacaaaattctttctcca 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tctacttaaaaaccatttttattgtagttgtaaaaacatctatataaaattctttctcca 380

                                                                       
Query: 181 tatctaattattttatgttattgaaatatgaaactcctcctatgtcctgcccaacatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctaattattttatgttattgaaatatgaaactcctcctatgtcctgcccaacatcta 440

                                                                       
Query: 241 acaggtttataattgtaatattttctgttcaagtatcctcattctttaaccatgtattgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 acaggtttataattgtaatattttctgttcaagtatcctcattctttaaccatgtattgg 500

                                                                       
Query: 301 cactgttatctggactatgacttttaaaaattttaacaaaccctaacataacctcctgaa 360
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 501 cactgttatctggactatgacttttaaaaaatttaacaaatcctaacataacctcctgaa 560

                                                                       
Query: 361 aacaccattttaatgaacctatgtgtaactcaaggtcacagagactatctctgatatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaccattttaatgaacctatgtgtaactcaaggtcacagagactatctctgatatttt 620

                                                                       
Query: 421 cttctcagcattttacagctttagctctcacattgttccctccgatcaatttg-agctca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cttctcagcattttacagctttagctctcacattgttccctccgatcaatttggagctca 680

                            
Query: 480 tttttgcatgtggtatg 496
           |||||||||||||||||
Sbjct: 681 tttttgcatgtggtatg 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)