BAC Information

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BAC

Clone NameMSMg01-129A14
Chromosome7 (Build37)
Map Location 64,617,370 - 64,617,589
singlet/doubletsinglet
Overlap geneGabrg3
Upstream genep, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129A14.T7 (MSMg01no129_a14.b1)MSMg01-129A14.TJ (MSMg01no129_a14.g1)
ACCAG337148AG337149
length740764
length of high quality
(start - end)
227 (46 - 272)30 (84 - 113)
definitionCHROMAT_FILE: MSMg01no129_a14.b1 PHD_FILE: MSMg01no129_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:19 2005CHROMAT_FILE: MSMg01no129_a14.g1 PHD_FILE: MSMg01no129_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGGAGGAAACCTTGAGTTTGAGAGCAGACTGTCCTCTCTGGCC
TCATCCAGCCCTGCCTGCCCTGCTGTCTAAAACTTAGCCTGTACAATGTT
TTTCATCCGTCCTTACCCCTGCAGCTGTCCAGTCTTTGTTTACTTCCACT
ACTGCTTCTGTACAACTTAACTACTTCGAGATTCGAACTCTAGAGTTCTT
TAGGAACACCTTTGTTGAGCTCTGGGTGAGCCTGGGTTCCTTGTCCTCCA
GCCACTTTTCATCACACTTAGTAAAGGTGCCTCTGGCTGATCCTCTTCTT
TCCACCTTTTTTTTTATTCCCCCCCCCCCCCCCCGAGTGTTCTATGATAA
AGTTTGTGCTGATTCTCTTTCAAAAAAAAAAATAGACCCAAGGATTCGTA
TTCAAATGTATATTATAACTAACAAATTACCAATTCTAACACCAAATGGT
CTGTCTCAAATGGCCTGTGTATATCTGACCCACCTTTCCCACGCCGAAAT
TACACCCCTGACAAACGTTTCTTCATCATCCATGCCACCCCTCTATCTTT
ATAAACCCCATTATTTTCCTTTTTCCCCCACTCTTGATTGCCCACCTATT
ATATTGCCCCCCCCTTTGCTGCTTGTTCAACCTTGTCCCCCTATCCGTAA
CTTTCCATTTCACCCGTACGTTGTGCCATCACAAACTTTN
NNTTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCCAGCCTGGTCTACAGAGC
AGGTTCCAGGACAGCCTGTGCTCCTCAGAGAAGCCATCTCTGATTACAAA
CTTCTCATTCTAATCTAAACATTTATGGATGCAAGGAAGGTACGGGAGGT
AGGTAGGGTAGTAAGGAAGCCACCTTTTTCTTTTTTTTCCCTCTCTCTTT
TTCTTTTTGTTCCTTTCTCCTTTTTTTTTTCTATTCTTTTTTCCCTTTCT
TCTTTTCTTTTTATTTTATTTTATTTCCTTTTTTCTCTTTTTTCTGTTTT
TTACACTTCTTTTTTTTTCCTTTCTTTTCTTTTTTTTTTCTCCCCCCCCG
CCCCCCCTTTTTCTCTCCTCCCTTTGTTTTTCTCCTCCTTTCTTTCCCTC
CCCCCCCAATTCATACTACCCCCCTTTTTTCTCTTTTGTTTTCTCTCCTT
TCTCTTTCCCCTCTCTTCCTCTCCCCTCCTTTTTCTTTTCTTTCTCTCCC
CCCCCTTCTCTCCCCCCTCTTTTTTTTCCCCTCTATTTTCCTCTTTCTTT
CTTTCCTCTTTTTCCCCTCTTTTTCTCTTTTTTTTCCCTCTTTTTTCTCC
TTTCCCCCTCTCTTTTTTTCCTCTCCCCTTATCTCCTCCTTCTTTTTCTC
CCTTTTCCCCTTTTCTCCCTTTCTCTTCCGTTTTCTTGCTCTTTCCTTTT
TCCCCTTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_a14.b1 MSMg01no129_a14.b1 CHROMAT_FILE:
MSMg01no129_a14.b1 PHD_FILE: MSMg01no129_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:19 2005
         (227 letters)



>mm_chr7_64617167_64617789
          Length = 623

 Score =  391 bits (202), Expect = e-113
 Identities = 217/224 (96%), Gaps = 4/224 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtggaggaaaccttgagtttgagagcagactgtcctctctggcctcatccag 63
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 423 ggaattcagtggaggaaaccttgagtttgagagca----gtcctctctggcctcatccag 368

                                                                       
Query: 64  ccctgcctgccctgctgtctaaaacttagcctgtacaatgtttttcatccgtccttaccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccctgcctgccctgctgtctaaaacttagcctgtacaatgtttttcatccgtccttaccc 308

                                                                       
Query: 124 ctgcagctgtccagtctttgtttacttccactactgcttctgtacaacttaactacttcg 183
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct: 307 ctgcagctgtccagtctttgtttacttccactactgcttctgtacaagttaactgctttg 248

                                                       
Query: 184 agattcgaactctagagttctttaggaacacctttgttgagctc 227
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agattcgaactctagagttctttaggaacacctttgttgagctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 623
Length adjustment: 9
Effective length of query: 218
Effective length of database: 614
Effective search space:   133852
Effective search space used:   133852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)