BAC Information

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BAC

Clone NameMSMg01-129A24
Chromosome7 (Build37)
Map Location 130,788,928 - 130,789,212
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129A24.T7 (MSMg01no129_a24.b1)MSMg01-129A24.TJ (MSMg01no129_a24.g1)
ACCAG337167AG337168
length733704
length of high quality
(start - end)
316 (45 - 360)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no129_a24.b1 PHD_FILE: MSMg01no129_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:21 2005CHROMAT_FILE: MSMg01no129_a24.g1 PHD_FILE: MSMg01no129_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCACAACCCTCAGGGCCAAGGAAAATAGAAAGCACACATTAAACC
CTAAAAGCCCAACTCCTAAAATAAAAGGCAACCACCTATCCCCCTACTGT
ACATTAATGATGGCTCTGACTACCCTAAACATATTTAACATCTACAAAAA
CTCCAAACATCCTCCTATCTCCCTCCATTAGCATACAACAAAATTAGCCA
CCACCACCCCCCATCCTAGTACAATGGCGAGATCCTTTGGACAGAATTTG
GAAAGAACCAGACCCCTTCCTTACAACCGGGAGGGGTTTTGCTTGTGTCT
TTCCATAGGACCATTTTATTCCTACCCCCCCCCCGCCCAGAAATGTCCAA
CACAACCCCACCGACCACGAAGATGACCAGCAAAACACTGGCGGAGCGGG
TGTGGACAGAACAATGCCAGCAGGAGGCCCAGGACTCTCCCACCCTCCAA
TGACACACCCCATCTCCTGCATTGACATCCCCCGACCCTGCTGACTGCTG
CTTAGTCCCTGTGCCTTCCACAATTCCCACCCTTTCTTCCATTCTCCTTG
GCTGTTTTCCAGCTATTCTCTCAGTCAACCCCTGCTGTTGCCCACCCTCT
TCCTTACCCCTGTCTAACACTCTCCCCCGTGACACCCCCTTGCTTCTGTA
CACCTCTCCCACGCGATACCCCGCCCCCCCCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTGGACTGGATGGGAGGTTTCTTCA
GGGGTCTACTTGGCAGTTTGTGCTTCCCAGCATTGACAATTCAGGCAGAA
GCAGGGCAGACTTGCTGACTCCTTGGGATTTCAGAGCCTGGTCCCTTGAG
CCCAGATTTTATGACCCTGCTCTCATTGGCATGGATTCTTTTGTACATTT
GGTGCTTTGAGCGGCCTTCAAGGCTAGGCACCACCTCCAGCTACTCAGTA
CCCAGAATGTGCCCCTGAGTGATCTGAGGTCTGCATGGTGATGAGCAATT
TGATGCCTGTTCTTTTTGTACCCCCACCACCACAGATGCATTCCACCTGT
TTTCCTTGACAGTGGTAATGCCGCATAGATAACAGCCTCCCGTGAGCGTC
CTACTGTGTATTAAAGTGTCTCTTTCAGACTTGACTTGGCCTTGAGGATT
TAGGATAGGAATTAATTCCCATCGACTTTGTCGCCCCAACAAAACTGGGT
GATGATTTTCAGGTGTGCTGTCTACCCCCACCACCTGAATATGGCCTCTT
AATACACTTCCCTTCTTTTTTCGCCACCGTTTATGCAAGGTCATTCCCCC
TTTACTGCTATCGCCATGACCCACTTCTATCCCCAACCTTTTTTCTCTAC
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_a24.g1 MSMg01no129_a24.g1 CHROMAT_FILE:
MSMg01no129_a24.g1 PHD_FILE: MSMg01no129_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:21 2005
         (285 letters)



>mm_chr7_130788728_130789412
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggactggatgggaggtttcttcaggggtctacttggcagtttgtgcttcccagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttttggactggatgggaggtttcttcaggggtctacttggcagtttgtgtttcccagcat 260

                                                                       
Query: 61  tgacaattcaggcagaagcagggcagacttgctgactccttgggatttcagagcctggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaattcaggcagaagcagggcagacttgctgactccttgggatttcagagcctggtc 320

                                                                       
Query: 121 ccttgagcccagattttatgaccctgctctcattggcatggattcttttgtacatttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgagcccagattttatgaccctgctctcattggcatggattcttttgtacatttggt 380

                                                                       
Query: 181 gctttgagcggccttcaaggctaggcaccacctccagctactcagtacccagaatgtgcc 240
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 381 gctttgagcggccttcaaggctaggcaccgccaccagctactcagtacccagaatgtgcc 440

                                                        
Query: 241 cctgagtgatctgaggtctgcatggtgatgagcaatttgatgcct 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgagtgatctgaggtctgcatggtgatgagcaatttgatgcct 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)