BAC Information

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BAC

Clone NameMSMg01-129P23
Chromosome7 (Build37)
Map Location 7,108,459 - 7,108,648
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35
Downstream geneZfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129P23.T7 (MSMg01no129_p23.b1)MSMg01-129P23.TJ (MSMg01no129_p23.g1)
ACCAG337864AG337865
length692700
length of high quality
(start - end)
190 (125 - 314)231 (127 - 357)
definitionCHROMAT_FILE: MSMg01no129_p23.b1 PHD_FILE: MSMg01no129_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:36 2005CHROMAT_FILE: MSMg01no129_p23.g1 PHD_FILE: MSMg01no129_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATAAAATATTCTATTACATTAATTGCTTATGTGTGTGGGATAGGTAA
CACATGTACAGGTGTTCCTCCCAGCAAATGATACCCCTATCTGTACATTT
ACATGCGCTTGTGAGACACCTGGAATGGGTGCTGGAATCTGAACCCAGGT
TCTTTGGTAGAACAAAGTATTCTGTTTATAGCTAATCCAAGGTATGCTTT
TAGGTAACTTATCAAATAATAGCTCTACACAAATGCATTGTTGTAGATAT
GAATTCTGAAAACCAAGGATTAACATCAACATTCTCTGAAATGACATTAA
AATTATTTGTAATCCCCCCCACCCCCCACCTTGTATCCATGATGGGAATT
GAAACTCAGTCCTCCCGCACAAAAAAAAAACACAAGCCGGCTGGGGTGAC
CCCTCTTGCTCGAGGATTCCTCTGCTATATTGCTCATTCTACTTTGTCCA
TACTGTATTCATCTCTGACAATATTCACAGACATCTGAATCGAATATGAA
TGCACATGAGGCTAGGATATGCGCGCTCAACTTTCTACATGCCCACCGAA
TTTTAGGTAAAGGACTTCTTTACCTCTTATTATCTATACACGCTTCTTTT
CCATCATTGCTACCCCTTATAGCCACCCCCAAATAACCCCCC
ACGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGACCAACCTGGGCTACAGTGAGACG
TGGTCTCAAAAAACAAATTGCACCAACAACTAAAGAAAAATCAAACCTCA
AGCAATAAAAACTAAAACTGGAAGGCTATAGATTTTTGTTTTTGGCATAG
CGACTACTCTTAAAATATATCTCTTAGCTGGCTGACTGTAGGGCATGCCT
TTAATCCCAGCACCTGGGAGGCAGAGGTGTGTGCATATTGGGAGTGCAGG
GGGGAGGGGAGGAGTGTGTCTCTGTGAGTTCAAGACTATGCAAAGGGAAT
ACAATGGGATATTTTTGCCGCCCCCCCCGCCTTTCAGGTGGTGGTTTCTT
TTTTCCCCTTAGCTGGACCCGAACATAACAAATATACTCACATTGCCTAC
TCTGAAAAGAACAGGAAAGGCTCACTGCTCCAGGCTGTCAATTTCCTTTA
AAAGCAGTGAGCCAGTTGGGTACTGGTGGAGCCCGCCTTTAATCCCTGCA
CTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGACTGGGCT
TGAACAGAGCGAGTTCCAGAACTACACCGAGCTATACAGAGAAACCCTGT
CTCGAAAACCAGAAACAAACCCAACTAAACACCCTTGACCAAAACCAAAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_p23.b1 MSMg01no129_p23.b1 CHROMAT_FILE:
MSMg01no129_p23.b1 PHD_FILE: MSMg01no129_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:36 2005
         (190 letters)



>mm_chr7_7108259_7108848
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgatacccctatctgtacatttacatgcgcttgtgagacacctggaatgggtgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 390 caaatgatacccctatctgtacatttacatgcgcttgtgagacacctggcatgggtgctg 331

                                                                       
Query: 61  gaatctgaacccaggttctttggtagaacaaagtattctgtttatagctaatccaaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaatctgaacccaggttctttggtagaacaaagtattctgtttatagctaatccaaggta 271

                                                                       
Query: 121 tgcttttaggtaacttatcaaataatagctctacacaaatgcattgttgtagatatgaat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgcttttaggcaacttatcaaataatagctctacacaaatgcattgttgtagatatgaat 211

                     
Query: 181 tctgaaaacc 190
           ||||||||||
Sbjct: 210 tctgaaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)