Query= MSMg01no130_b04.b1 MSMg01no130_b04.b1 CHROMAT_FILE:
MSMg01no130_b04.b1 PHD_FILE: MSMg01no130_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:42 2005
(287 letters)
>mm_chr7_130326898_130327586
Length = 689
Score = 516 bits (267), Expect = e-151
Identities = 283/289 (97%), Gaps = 2/289 (0%)
Strand = Plus / Plus
Query: 1 ggaatttgaaaccactaaaattctaataaattgtgccttcagatactggccccttttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ggaatttgaaaccactaaaattctaataaattgtgccttcagatactggagtcttttttc 260
Query: 61 tcagatgttactgttggagctatttggagtcatctatccctgctccttcttactcaccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatgttactgttggagctatttggagtcatctatccctgctccttcttactcaccgg 320
Query: 121 gagctggaacaatgaattatttatacctttttttttt--gagagctgaacatttaaatta 178
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gagctggaacaatgaattatttataccttttttttttttgagagctgaacatttaaatta 380
Query: 179 gcgtcctttggctagtgagccatctggaaattcatcagtttgcaatcaaggaatgacaac 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtcctttggctagtgagccatctggaaattcatcagtttgcaatcaaggaatgacaat 440
Query: 239 tgagagtgatcatatattatacatggcattctgataaaatggctaaact 287
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagagtgatcatatattatacatggcattctgataaaatggctaaact 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 689
Length adjustment: 9
Effective length of query: 278
Effective length of database: 680
Effective search space: 189040
Effective search space used: 189040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_b04.g1 MSMg01no130_b04.g1 CHROMAT_FILE:
MSMg01no130_b04.g1 PHD_FILE: MSMg01no130_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:42 2005
(510 letters)
>mm_chr7_130466933_130467842
Length = 910
Score = 955 bits (494), Expect = 0.0
Identities = 506/510 (99%)
Strand = Plus / Minus
Query: 1 cagaagcctacagggtagaaggagagaactgacccacaagttgaactctggcttccacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 cagaagcctacagggtagaaggagagaactgacccacaagttgaactctggcttccacat 789
Query: 61 ttgcactggtataggtgctccctgcccccagtaaatgaattatttttaataattttaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttgcactggtataggtgctccctgcccccagtaaatgaattatttttaataattttaagt 729
Query: 121 tttaagtaaaaattaaaacaaaatctaaaatccaaaattgtctgaaattggagacttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttaagtaaaaattaaaacaaaatctaaaatccaaaattgtctgaaattggagacttttt 669
Query: 181 gaatgcagactttggaccattacatgttttggattttcaagttagggatactcagtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaatgcagactttggaccattacatgttttggattttcaagttagggatactcagtcagt 609
Query: 241 aaagacagtgcacctattccaagtctaaaaatctgaaacactgtcccaagatttcacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaagacagtgcacctattccaagtctaaaaatctgaaacactgtcccaagatttcacaca 549
Query: 301 agcacacttagtctctgttcacctgattaattagtaacaacctcaccaccaacagtagca 360
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 548 agcacacttagtctctgttcacctgattaattagtaacaacctcagcagcaacagtagca 489
Query: 361 gctgttggacccctggggagcacaccctgtgttgggggacaccccaccaccaccatgtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctgttggacccctggggagcacaccctgtgttgggggacaccccaccaccaccatgtgc 429
Query: 421 acaaggcacctgaagttcatttagttaaaggacagccacagggacaactcttcctggtgc 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acgaggcacctgaagttcatttagttaaaggacagccacagggacaactcttcctggtgc 369
Query: 481 aattgcctggagggtaagggtacccagagt 510
|||||||||||||| |||||||||||||||
Sbjct: 368 aattgcctggagggcaagggtacccagagt 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
