BAC Information

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BAC

Clone NameMSMg01-131O05
Chromosome7 (Build37)
Map Location 96,316,502 - 96,474,918
singlet/doubletdoublet
Overlap geneTmem135, LOC100039969
Upstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneFzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131O05.T7 (MSMg01no131_o05.b1)MSMg01-131O05.TJ (MSMg01no131_o05.g1)
ACCAG339273AG339274
length710699
length of high quality
(start - end)
665 (46 - 710)327 (371 - 697)
definitionCHROMAT_FILE: MSMg01no131_o05.b1 PHD_FILE: MSMg01no131_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:15 2005CHROMAT_FILE: MSMg01no131_o05.g1 PHD_FILE: MSMg01no131_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,316,502 - 96,317,159)(96,474,592 - 96,474,918)
sequence
CCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCG
CGGAATTCTATATTTCCTGACAGATCTGGGTTAAAGCAAAGAGAACACAA
TAGCCATCTACTGACTTGAGAAACTGTATAGGATTCAGGGAGAAAATGAG
CTTTGTTTTGGAAATATAAGAGTGAGATGTGCCTGAGCTGAATACCAGAT
AGTAAAGGATGCCGGCGCTGACTATGAAGGTCTGGGGAGCATGGGGGACA
AGTTTTTACACAGTGTGTAAACACGGGAGGCTAGATACAACCACAAACAA
GGAACCAAGTACAGATGTACAAGTGTCAGGTGCATGTGTATGTATGCATG
ATTTATCCATAAGCATAACACAGAAAGACATTTCATCAAGTTCTCTAAAA
TAAAGTCTCACTTTATTTTCAACTGTCCATAGGGCTAATACATTGAACTC
ATGTGTGACTAAACTTGCTATTTAGTCTGTGCAGATAGATGGCATAAACT
AACATAATTCAGCCCCCAGTCTACTTTTGCAAGGCTCTATGCTAATGTAA
GGTGTAAGAAGAAGCCAATGATGGCAACGGAGAAAGGGGTTTTCAGCTCT
GCAGCAAAAATCTCAGTAGATATACAACTATTATCAAAGACTCAGGATGG
AACTATAGGCTGCATTTCAGGAAGCAGAGTCTAATACTTATGTTATTAAA
ATAGCATCCT
CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATGCCCGCGGATTCTCTTCAGTAAGAGTGGTCTACTTGGA
AAAATTTATATATTTCACCTTATATTTTGAAAATGAAAGTACATTTTGGG
TTTCCAGCCCAGGGGAGCTAAGTTCACTCTGAAAATCCATAAGGTGACTT
GGTGCTCAGATGCTGTTTTATACCCAGCATCCTGTTGGGGTCATTATGCT
GCAGATTGTTTGAAATAACCCAACCTTTGCTTTTCTTTTCAAACCTGCAC
CCCAGAAACAGTCGTGCACAGGAGACCATGAGTTAATCAGGATAGTGTGG
ATTTCTTCTTGTGTCCACGGCCTTATCTACAGCCTGCAGAGCGGAGTGTA
ACTCTTCACTCAGGCTTCACTTCCTCTCACCGTGCCTCTTATCCCATCAT
TTCATTCGTAAAATATTGTCTATAGTAAGTTAGGAATACAGGGCTGGAGG
GATCTGGGATTATAGGTAAAAGGGGATGCTTCAAAACAGCAAAGTTGTTT
CACCTGGAGTAAGGGCTATTAGGTGATATACAGTGTTACTAGGTTTTTAA
TTTGTTCTAGTTTGCAGGGCTAGGAAGACCCCTTTCCCAGGGAAATGACC
TAGTGATATGACTGAGCCAGGGAATATATATGAGGCTTCATGTTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_o05.b1 MSMg01no131_o05.b1 CHROMAT_FILE:
MSMg01no131_o05.b1 PHD_FILE: MSMg01no131_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:15 2005
         (665 letters)



>mm_chr7_96316295_96317359
          Length = 1065

 Score = 1241 bits (642), Expect = 0.0
 Identities = 654/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctatatttcctgacagatctgggttaaagcaaagagaacacaatagccatctact 67
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctatacctactgacagatctgggttaaagcaaagagaacacaatagccatctact 267

                                                                       
Query: 68  gacttgagaaactgtataggattcagggagaaaatgagctttgttttggaaatataagag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gacttgagaaactgtataggattcagggagaaaatgagctttgttttggaaatataagag 327

                                                                       
Query: 128 tgagatgtgcctgagctgaataccagatagtaaaggatgccggcgctgactatgaaggtc 187
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgagatatgcctgagctgaataccagatagtaaaggatgccggcgctgactatgaaggtc 387

                                                                       
Query: 188 tggggagcatgggggacaagtttttacacagtgtgtaaacacgggaggctagatacaacc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggggagcatgggggacaagtttttacacagtgtgtaaacacgggaggctagatacaacc 447

                                                                       
Query: 248 acaaacaaggaaccaagtacagatgtacaagtgtcaggtgcatgtgtatgtatgcatgat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acaaacaaggaaccaagtacagatgtacaagtgtcaggtgcatgtgtatgtatgcatgat 507

                                                                       
Query: 308 ttatccataagcataacacagaaagacatttcatcaagttctctaaaataaagtctcact 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttatccataagcataacacagaaagacatttcatcaagttctctaaaataaagtctcact 567

                                                                       
Query: 368 ttattttcaactgtccatagggctaatacattgaactcatgtgtgactaaacttgctatt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttattttcaactgtccatagggctaatacattgaactcatgtgtgactaaacttgctatt 627

                                                                       
Query: 428 tagtctgtgcagatagatggcataaactaacataattcagcccccagtctacttttgcaa 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagtctgtgcagatagatggcataaactaacataattcagcccccagtctacttttgcaa 687

                                                                       
Query: 488 ggctctatgctaatgtaaggtgtaagaagaagccaatgatggcaacggagaaaggggttt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggctctatgctaatgtaaggtgtaagaagaagccaatgatggcaacggagaaaggggttt 747

                                                                       
Query: 548 tcagctctgcagcaaaaatctcagtagatatacaactattatcaaagactcaggatggaa 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tcagctctgcagcaaaaatctcagtagatatacaactattatcaaagactcaggatggaa 807

                                                                     
Query: 608 ctataggctgcatttcaggaagcagagtctaatacttatgttattaaaatagcatcct 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctataggctgcatttcaggaagcagagtctaatacttatgttattaaaatagcatcct 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no131_o05.g1 MSMg01no131_o05.g1 CHROMAT_FILE:
MSMg01no131_o05.g1 PHD_FILE: MSMg01no131_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:15 2005
         (327 letters)



>mm_chr7_96474392_96475118
          Length = 727

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttatctacagcctgcagagcggagtgtaactcttcactcaggcttcacttcctctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ccttatctacagcctgcagagcggagtgtaactcttcactcaggcttcacttcctctcac 468

                                                                       
Query: 61  cgtgcctcttatcccatcatttcattcgtaaaatattgtctatagtaagttaggaataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cgtgcctcttatcccatcatttcattcgtaaaatattgtctatagtaagttaggaataca 408

                                                                       
Query: 121 gggctggagggatctgggattataggtaaaaggggatgcttcaaaacagcaaagttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gggctggagggatctgggattataggtaaaaggggatgcttcaaaacagcaaagttgttt 348

                                                                       
Query: 181 cacctggagtaagggctattaggtgatatacagtgttactaggtttttaatttgttctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cacctggagtaagggctattaggtgatatacagtgttactaggtttttaatttgttctag 288

                                                                       
Query: 241 tttgcagggctaggaagacccctttcccagggaaatgacctagtgatatgactgagccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttgcagggctaggaagacccctttcccagggaaatgacctagtgatatgactgagccag 228

                                      
Query: 301 ggaatatatatgaggcttcatgtttca 327
           |||||||||||||||||||| ||||||
Sbjct: 227 ggaatatatatgaggcttcaggtttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)