BAC Information

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BAC

Clone NameMSMg01-131O22
Chromosome7 (Build37)
Map Location 71,843,589 - 71,950,411
singlet/doubletdoublet
Overlap geneApba2, 5730507A09Rik
Upstream geneOtud7a, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Downstream geneNdnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131O22.T7 (MSMg01no131_o22.b1)MSMg01-131O22.TJ (MSMg01no131_o22.g1)
ACCAG339305AG339306
length724719
length of high quality
(start - end)
676 (45 - 720)559 (79 - 637)
definitionCHROMAT_FILE: MSMg01no131_o22.b1 PHD_FILE: MSMg01no131_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:18 2005CHROMAT_FILE: MSMg01no131_o22.g1 PHD_FILE: MSMg01no131_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,949,804 - 71,950,411)(71,843,589 - 71,844,147)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGG
AATTCATTCTCTCGCGCCTCTGTTTTTAGACTCGGGCAATCAGGTGATTA
ACAGTTTGCAGTAATTATAGGTCATGTTTATTGAACCTTGCTGTGTGCCA
GCCATTGCTGGAAGCACACTTCTAAACTAATATTACCCTTGAAACTGTGC
TACAAGACACAAGCATTATTGTTCTCATTTAGCAGACGAAGACCCCAAGG
CATGTGACATTAAATCCCAGAATCATATAGCATTCAAAGGTGGAGCAGGG
AGTCCCGGGCAGGCAGGAGGTAATCGCTCAGGCACTGCAAGCTGCATGTG
AGTGGCTGGAACAAAGCAGAGCCCAGCGAGGAACTGATTCCCTTCCGGAC
TTGTAAAATAAACCTGCTCACTCTTGCATGTGTTTAATATCTTTCTTTTT
AATTACCCGAAAACGAACAAGCCACGGTTTCACATATTCCATATCGAGCA
GGCATGCTCTCTTGCTAACAGAATGCTTTCTGATGGGTGTTTTCCCTGTG
CCAAGATTTCAGTGTGCTATGAATTCTGCCTATGAAATAAATAGCCATTG
AGTGAAGTTCATACTTTACAGTGTAATGGCAAAGTTGTATGGCTCCCCGT
CTAAAGTGTTTGAGTTTTGTCAGACTCCTTAGAAAGGGCAATGTGTCCCT
TTACCCAGTGTACCATTCTGTTAT
TTCACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTTACAGTCTCATCCCAA
ATCTGAACCCAGGGATGCTCTCAGTCCTTTTGTGCAGGATGTTTAGGCTG
TCCTGAGGAACATCCTTCGGCCACTGTAAGTACATGGTATACATGTGAGA
CATGCACTTCCCACAGGACCACTACGCAGCATAAAGACCTGTCTTCGTGT
GCTCTGTGTTCCCTGAAGACCCCAGGACTGAACATAGAGCACACAGCTAT
CATTACGGCACAGATGGTGGGTGGCCTTTTCTCCCATATGTGAGACTGGC
ACAGACATCTTTTTACATACGAATGGTGTTTTCTGTCTTTTGTACTTCTT
GAGGGCCAGGGCCTGAGTGATACATGTTGTTGTAAAAGGGTCTGTGTTGA
CCCTTTTACATTCCCGCACCACTAACTTGCCTACTGTGTTCTCTTGGCCA
TGAGGTATGGTCCCACGTCTTATCTCTGTCTGGGATTTTTTTTCCTTTCC
TATTTCACAGACTGCTTCATGCATTTTGCTACTTGTTTCCTTTAGCCTGT
TTTCCTTTGGACTGGGACTGTTCCATTCTCACCGTCTCCATAGTTATTAA
GACACAGGTGACCCATCAGCTGTCAGTCTACCTCTTTGGGGCCCAGAAGG
AGTCAGTCAGATGACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_o22.b1 MSMg01no131_o22.b1 CHROMAT_FILE:
MSMg01no131_o22.b1 PHD_FILE: MSMg01no131_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:18 2005
         (676 letters)



>mm_chr7_71949336_71950411
          Length = 1076

 Score = 1137 bits (588), Expect = 0.0
 Identities = 603/608 (99%)
 Strand = Plus / Minus

                                                                        
Query: 69   aattataggtcatgtttattgaaccttgctgtgtgccagccattgctggaagcacacttc 128
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 aattataggtaatgtttattgaaccttgctgtgtgccagccattgctggaagcacacttc 1017

                                                                        
Query: 129  taaactaatattacccttgaaactgtgctacaagacacaagcattattgttctcatttag 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 taaactaatattacccttgaaactgtgctacaagacacaagcattattgttctcatttag 957

                                                                        
Query: 189  cagacgaagaccccaaggcatgtgacattaaatcccagaatcatatagcattcaaaggtg 248
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 956  cagacgaagaccccaaggcatgtgacattaaatcccagaatcatatagcattaaaaggtg 897

                                                                        
Query: 249  gagcagggagtcccgggcaggcaggaggtaatcgctcaggcactgcaagctgcatgtgag 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  gagcagggagtcccgggcaggcaggaggtaatcgctcaggcactgcaagctgcatgtgag 837

                                                                        
Query: 309  tggctggaacaaagcagagcccagcgaggaactgattcccttccggacttgtaaaataaa 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  tggctggaacaaagcagagcccagcgaggaactgattcccttccggacttgtaaaataaa 777

                                                                        
Query: 369  cctgctcactcttgcatgtgtttaatatctttctttttaattacccgaaaacgaacaagc 428
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 776  cctgctcactcttgcatgtgtttaatatctttctttttaattacctgaaaacgaacaagc 717

                                                                        
Query: 429  cacggtttcacatattccatatcgagcaggcatgctctcttgctaacagaatgctttctg 488
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 716  cacggtttcacatattccatatcgagcaggcatgctctcttgctagcagaatgctttctg 657

                                                                        
Query: 489  atgggtgttttccctgtgccaagatttcagtgtgctatgaattctgcctatgaaataaat 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  atgggtgttttccctgtgccaagatttcagtgtgctatgaattctgcctatgaaataaat 597

                                                                        
Query: 549  agccattgagtgaagttcatactttacagtgtaatggcaaagttgtatggctccccgtct 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 596  agccattgagtgaagttcatactttacagtgtaatggcaaagttgtatggctcccggtct 537

                                                                        
Query: 609  aaagtgtttgagttttgtcagactccttagaaagggcaatgtgtccctttacccagtgta 668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  aaagtgtttgagttttgtcagactccttagaaagggcaatgtgtccctttacccagtgta 477

                    
Query: 669  ccattctg 676
            ||||||||
Sbjct: 476  ccattctg 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no131_o22.g1 MSMg01no131_o22.g1 CHROMAT_FILE:
MSMg01no131_o22.g1 PHD_FILE: MSMg01no131_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:18 2005
         (559 letters)



>mm_chr7_71843389_71844347
          Length = 959

 Score = 1042 bits (539), Expect = 0.0
 Identities = 554/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgttacagtctcatcccaaatctgaacccagggatgctctcagtccttttgtgcagg 60
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 201 tcatgttacagtctcatcccaaatctgaacccagggattctctcagtcattttgtgcagg 260

                                                                       
Query: 61  atgtttaggctgtcctgaggaacatccttcggccactgtaagtacatggtatacatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtttaggctgtcctgaggaacatccttcggccactgtaagtacatggtatacatgtga 320

                                                                       
Query: 121 gacatgcacttcccacaggaccactacgcagcataaagacctgtcttcgtgtgctctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatgcacttcccacaggaccactacgcagcataaagacctgtcttcgtgtgctctgtg 380

                                                                       
Query: 181 ttccctgaagaccccaggactgaacatagagcacacagctatcattacggcacagatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctgaagaccccaggactgaacatagagcacacagctatcattacggcacagatggt 440

                                                                       
Query: 241 gggtggccttttctcccatatgtgagactggcacagacatctttttacatacgaatggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtggccttttctcccatatgtgagactggcacagacatctttttacatacgaatggtg 500

                                                                       
Query: 301 ttttctgtcttttgtacttcttgagggccagggcctgagtgatacatgttgttgtaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctgtcttttgtacttcttgagggccagggcctgagtgatacatgttgttgtaaaag 560

                                                                       
Query: 361 ggtctgtgttgacccttttacattcccgcaccactaacttgcctactgtgttctcttggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctgtgttgacccttttacattcccgcaccactaacttgcctactgtgttctcttggc 620

                                                                       
Query: 421 catgaggtatggtcccacgtcttatctctgtctgggattttttttcctttcctatttcac 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 621 catgaggtatggtcccacgtcttatctctgtcttggattttttttcctttcctatttcat 680

                                                                       
Query: 481 agactgcttcatgcattttgctacttgtttcctttagcctgttttcctttggactgggac 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 agactgcttcatgcattttgctacatgtttcctttagcctgttttcctttggactgggac 740

                              
Query: 541 tgttccattctcaccgtct 559
           |||||||||||||||||||
Sbjct: 741 tgttccattctcaccgtct 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)