BAC Information

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BAC

Clone NameMSMg01-132M03
Chromosome7 (Build37)
Map Location 50,718,917 - 50,857,306
singlet/doubletdoublet
Overlap gene2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
Upstream geneLOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb
Downstream gene4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132M03.T7 (MSMg01no132_m03.b1)MSMg01-132M03.TJ (MSMg01no132_m03.g1)
ACCAG339911AG339912
length692686
length of high quality
(start - end)		633 (52 - 684)610 (77 - 686)
definitionCHROMAT_FILE: MSMg01no132_m03.b1 PHD_FILE: MSMg01no132_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:22 2005CHROMAT_FILE: MSMg01no132_m03.g1 PHD_FILE: MSMg01no132_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,718,917 - 50,719,547)(50,856,696 - 50,857,306)
sequence
GCCTTTTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG
GCGGAATTCAAGCCATGTCCCTGGATTATTCAGGACCAATGTTTCCGCTG
AGGAACAGTATCTCAGCCCTGATGTCACCTCCTCTGAAACCCCTCCTTCC
AGAGTGTCTCTTGATGGTTTAGATTCTCAAGATCCTGACAAAGACTCTGG
GCTTCCCTTCCTCGTCAAGACTCCAGCTTCACAAATATCAGTTCAAACTC
CAGACACCAAAGTACCTACCAAGGCCTCAGGTTCAAAGCTATCCCTGGAG
CATCACAACCTTGAACCTGGATCCAAAATTTCTTCAGAGATTTACCAAGC
TGCAAGCTTTCCTCAGCAAGTGGGGGGACCCCTGGCTGTGCTAGTGGGAA
CCACCATCAGGCTCCCCTTGACCCCGGTCCCCAGCTCCAGTCCCCCTGCT
CCTCTGGTGGTCTGGCGCCGGGGTTCCAAGGTATTGGCAGCTGGGGGTCT
GGGGTCACAGGCTCCACTAATTAGTCTGGACCCCATGCATCAAGCCCGCC
TGAGATTTGACCAGATTCGAGGGGGTCTGGAACTCACCTCTGCCCGGCTG
GATGATGCAGGGGTGTACACAGTTGAGGTCATCAGGGGAGGAGTCTCCCA
GCAGATTCGAGAGTTTGTGGTGGGTGTATTTGGTAAGTGGGG

CCCCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCTCCTGACCTTCTAATACC
CTTGTGCTGGAAAAAACCCTTACACATTTCCCTACAGGAAATACCATATG
GGCAACAGAAAATGATCAAAATCCCTGGTCCCTGGCAGCCTCACAAAAAA
GCTCCTCTCCTGGCTCTGCTGGGAGCACTGGAACCCTCACCCAAACCCTT
TTGTAAAATCTCTTTTATTAGTCTTGAAGATGCTGTGTCCCTAGTTTGAG
TCAAAATTGAATAAATTACTTTCCCCATTTATATCTACTTTACGTTATTT
TTCTCTTCTTGTAGGGTGTGTCAGGTTTCACAGCAGGGCTCCTCACACAC
TCCTGGCCAAAAAGCAGAGAGGTTGTCCTTACAGCCACACACCAGCCCCA
GGCTCCATTGATGCCCTTGGCAATACTGCTCTCCGGACTCCCATAGGACT
TTCACCTCAACCCAACCACGGCATCACTCTGCAGCTGCTTCGGCACAAAC
CAGTGTTCAGCAACATCAGCAACACAACATCCTCCCTACTGCCGCCACTC
AATTCATACCACACCACAGAGAGTTCTTCACACAGCATGCCAGGGCCCTA
ACTTCTGCCCACAAAGGCCAGAGTCCTTGTTGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_m03.b1 MSMg01no132_m03.b1 CHROMAT_FILE:
MSMg01no132_m03.b1 PHD_FILE: MSMg01no132_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:22 2005
         (633 letters)



>mm_chr7_50718715_50719747
          Length = 1033

 Score = 1212 bits (627), Expect = 0.0
 Identities = 630/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaagccatgtccctggattattcaggaccaatgtttccgctgaggaacagtatct 62
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaagccatgtgcctggattattcaggaccaatgtttccgctgaggaacagtatct 262

                                                                       
Query: 63  cagccctgatgtcacctcctctgaaacccctccttccagagtgtctcttgatggtttaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagccctgatgtcacctcctctgaaacccctccttccagagtgtctcttgatggtttaga 322

                                                                       
Query: 123 ttctcaagatcctgacaaagactctgggcttcccttcctcgtcaagactccagcttcaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttctcaagatcctgacaaagactctgggcttcccttcctcgtcaagactccagcttcaca 382

                                                                       
Query: 183 aatatcagttcaaactccagacaccaaagtacctaccaaggcctcaggttcaaagctatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatatcagttcaaactccagacaccaaagtacctaccaaggcctcaggttcaaagctatc 442

                                                                       
Query: 243 cctggagcatcacaaccttgaacctggatccaaaatttcttcagagatttaccaagctgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctggagcatcacaaccttgaacctggatccaaaatttcttcagagatttaccaagctgc 502

                                                                       
Query: 303 aagctttcctcagcaagtggggggacccctggctgtgctagtgggaaccaccatcaggct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagctttcctcagcaagtggggggacccctggctgtgctagtgggaaccaccatcaggct 562

                                                                       
Query: 363 ccccttgaccccggtccccagctccagtccccctgctcctctggtggtctggcgccgggg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccccttgaccccggtccccagctccagtccccctgctcctctggtggtctggcgccgggg 622

                                                                       
Query: 423 ttccaaggtattggcagctgggggtctggggtcacaggctccactaattagtctggaccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttccaaggtattggcagctgggggtctggggtcacaggctccactaattagtctggaccc 682

                                                                       
Query: 483 catgcatcaagcccgcctgagatttgaccagattcgagggggtctggaactcacctctgc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catgcatcaagcccgcctgagatttgaccagattcgagggggtctggaactcacctctgc 742

                                                                       
Query: 543 ccggctggatgatgcaggggtgtacacagttgaggtcatcaggggaggagtctcccagca 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccggctggatgatgcaggggtgtacacagttgaggtcatcaggggaggagtctcccagca 802

                                          
Query: 603 gattcgagagtttgtggtgggtgtatttggt 633
           |||||||||||||||||||||||||||||||
Sbjct: 803 gattcgagagtttgtggtgggtgtatttggt 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_m03.g1 MSMg01no132_m03.g1 CHROMAT_FILE:
MSMg01no132_m03.g1 PHD_FILE: MSMg01no132_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:22 2005
         (610 letters)



>mm_chr7_50856496_50857506
          Length = 1011

 Score = 1166 bits (603), Expect = 0.0
 Identities = 609/611 (99%), Gaps = 1/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggctcctgaccttc-taatacccttgtgctggaaaaaacccttacacatttccctac 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cttggctcctgaccttcataatacccttgtgctggaaaaaacccttacacatttccctac 752

                                                                       
Query: 60  aggaaataccatatgggcaacagaaaatgatcaaaatccctggtccctggcagcctcaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aggaaataccatatgggcaacagaaaatgatcaaaatccctggtccctggcagcctcaca 692

                                                                       
Query: 120 aaaaagctcctctcctggctctgctgggagcactggaaccctcacccaaacccttttgta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaaaagctcctctcctggctctgctgggagcactggaaccctcacccaaacccttttgta 632

                                                                       
Query: 180 aaatctcttttattagtcttgaagatgctgtgtccctagtttgagtcaaaattgaataaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaatctcttttattagtcttgaagatgctgtgtccctagtttgagtcaaaattgaataaa 572

                                                                       
Query: 240 ttactttccccatttatatctactttacgttatttttctcttcttgtagggtgtgtcagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttactttccccatttatatctactttacgttatttttctcttcttgtagggtgtgtcagg 512

                                                                       
Query: 300 tttcacagcagggctcctcacacactcctggccaaaaagcagagaggttgtccttacagc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttcacagcagggctcctcacacactcctggccaaaaagcagagaggttgtccttacagc 452

                                                                       
Query: 360 cacacaccagccccaggctccattgatgcccttggcaatactgctctccggactcccata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cacacaccagccccaggctccattgatgcccttggcaatactgctctccggactcccata 392

                                                                       
Query: 420 ggactttcacctcaacccaaccacggcatcactctgcagctgcttcggcacaaaccagtg 479
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 391 ggactttcacctcaacccaaccacagcatcactctgcagctgcttcggcacaaaccagtg 332

                                                                       
Query: 480 ttcagcaacatcagcaacacaacatcctccctactgccgccactcaattcataccacacc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttcagcaacatcagcaacacaacatcctccctactgccgccactcaattcataccacacc 272

                                                                       
Query: 540 acagagagttcttcacacagcatgccagggccctaacttctgcccacaaaggccagagtc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acagagagttcttcacacagcatgccagggccctaacttctgcccacaaaggccagagtc 212

                      
Query: 600 cttgttgctaa 610
           |||||||||||
Sbjct: 211 cttgttgctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space:   600600
Effective search space used:   600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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