BAC Information

Click to search

BAC

Clone NameMSMg01-133K16
Chromosome7 (Build37)
Map Location 25,180,877 - 25,181,109
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4
Downstream gene1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K16.T7 (MSMg01no133_k16.b1)MSMg01-133K16.TJ (MSMg01no133_k16.g1)
ACCAG340583AG340584
length687710
length of high quality
(start - end)		233 (126 - 358)534 (75 - 608)
definitionCHROMAT_FILE: MSMg01no133_k16.b1 PHD_FILE: MSMg01no133_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:32 2005CHROMAT_FILE: MSMg01no133_k16.g1 PHD_FILE: MSMg01no133_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGAAAATCTCCTGACCCTCAGATGGCATCAGAGCCCATGTACTAAC
ACAAAATATGCATATTGTAGTCCCCAATGTAAAAAAAGTAATGAGACCAT
TGAGAGAGGAGAGACAGAGAGAGAGACAAAGACAGAGAGAGGCTCTCAGA
GGCCTAAGTCCAGTTTGAGCTTCCACAAAGAGAAAAGGAGACATTCTGGG
AGCAGAAATCCAGCTTAGTGTGCCCGTCCTGTCCACTGTCTCCCTGCACC
ACCATTCCCTCTTCAGAAAACCTCATTGTGGGGGTGAGGTGGCTCACACC
TTAAAACCTATCATCNTTCCCCCCCCGCCCGCAGATCTCAGGAGTTCCAG
GCTAGCTGGGGCTCCATAGTAGATACCATGTGTCCCAGGGTTCCCCAAGA
CAGGAGCCTGGGGTCAGTACTTCCTCCAAATGCCAGCACTTAAATAAAGT
TGACTCCCCTACCCTCTCTTATCTCCTAACTGTTTGCTTCTAACATCAGT
CTTTTACCTGATCTATTTAGGGTTATTATTCAGTGAGAATAGTCTGTTTT
CTTAGCTGTTTCCAATGTAGGATTTACTGTAACTGAAGCCACAATGTCCG
ACTCTGTGTGTGGGTGGGCGGTGCCTGCATGTGACTC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAACCTGAGGTACAGAGTAAG
ACCCTGTCTCAAAATGATACTAGTAACAAATAGCAGAACAGCGGCACACA
CCAGCAACCCTCAGCACTACAGAGGAAGCAGGAGGATCACAAGGCAAGGC
CAGTCTGAGCTACACACACAGTAAATGTCTCTCTCAAAACACTGAAGGTC
TGGGGGCATGGCTCAGTGAAAGAGCTCCTGCATAGAATCCCCCAGTGAGG
GGCTGGGGGCGTGGCTCATTGGTAGAGCCCCTGCCTAGAATCCCCCAGTG
AGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCA
GTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCC
CCAGTGAGGGGCTGGGATATAGCTCAGCAGGTGAAAGCACTAGGTCTTCC
AGAGGACCCAGGCTTGATGCCCAGCACCCACACAGCACCTCACAACCATC
TGTAATTCCAGTTCCAGGGGATTTGATGCCCTTCTCTGGCCTCTTCAGCA
ACTAGGCATATGCACAAACATACATGCAGACAAACACTCAGACATATAAA
ACAAAAATCTGCCAGGTCTGGTGGTGTACGCCTTTAATCCTAGCATTCAG
AAAACAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k16.b1 MSMg01no133_k16.b1 CHROMAT_FILE:
MSMg01no133_k16.b1 PHD_FILE: MSMg01no133_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:32 2005
         (233 letters)



>mm_chr7_25180677_25181309
          Length = 633

 Score =  400 bits (207), Expect = e-116
 Identities = 227/235 (96%), Gaps = 4/235 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtaaaaaaagtaatgagaccattgagagaggagagacagagaga--gagacaaagac 58
           |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||  |||
Sbjct: 201 aatgtaaaaaaagtaacgagaccattgagagaggagagacagagagatagagaca--gac 258

                                                                       
Query: 59  agagagaggctctcagaggcctaagtccagtttgagcttccacaaagagaaaaggagaca 118
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agagagaggccctcagaggcctaagtccagtttgagcttccacaaagagaaaaggagaca 318

                                                                       
Query: 119 ttctgggagcagaaatccagcttagtgtgcccgtcctgtccactgtctccctgcaccacc 178
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 ttctgggagcagaaacccagcttagtgtgcccgtcctgtccactgtctccctgcaccatc 378

                                                                  
Query: 179 attccctcttcagaaaacctcattgtgggggtgaggtggctcacaccttaaaacc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attccctcttcagaaaacctcattgtgggggtgaggtggctcacaccttaaaacc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |