BAC Information

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BAC

Clone NameMSMg01-134I07
Chromosome7 (Build37)
Map Location 6,478,940 - 6,479,461
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349
Downstream geneLOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134I07.T7 (MSMg01no134_i07.b1)MSMg01-134I07.TJ (MSMg01no134_i07.g1)
ACCAG341213AG341214
length1,1291,236
length of high quality
(start - end)
275 (126 - 400)768 (89 - 856)
definitionCHROMAT_FILE: MSMg01no134_i07.b1 PHD_FILE: MSMg01no134_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:00 2005CHROMAT_FILE: MSMg01no134_i07.g1 PHD_FILE: MSMg01no134_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCCTTTTTTTACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCACTAAAGCCACCCCCTTATAAGCTTTTTTGGTTGGGAG
ACTTAATGACTGTTTCCTTTTCCCTAGTGGTTATAGAACTATTTAAATAG
TTTAAGTGATCTTGACTTAGCTTTGGTGGTAATTGGTATTTATCTAGAAA
ATCATCCATTTCATTTAGACTTTCCAATTTTGTAGAGTACAGGCTTTTGA
AGTAAAATGTAAACTGGGCGTGTTTGCTTCTTCTTCTTCTTTTTTTTTTT
TTCTAGAGCCTTCAGATGTACTTTTAATTCAAGAGTATGAGAACTCCCTG
TTTTTGTTTTTGTTTTTGATTTGTTGTTGTTGTTTTGGTTTTTTGAGACA
GTTTTTTTCTGTATAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACCAC
GCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGC
ATTAAAGGCGTGTGCCACCACACCCGGACCCTGATTTCTTTATGAGGACA
CTTAATGCTATGAAGTTTCCTCTTAGCACTGCTTTCATAGTGTCCCATAC
GTTTAGGTATGTTGTGCCTTCATTTTCATTGAATTCTATAAAGTCCTTAA
TTTCTTCCCTGACCCTCATTGAGTAGAGGTCATTGATTATAGAGTTATTC
AGTTTCCATGATTATGCTGGTTTTCTGTTGTTTCTGTTTGTTGACTCCAT
CTTTACTCCATGGCGATTTGATTTTGTGTTTTTTCATTCTTTCCTTCTGT
TGGGGAATTGTTTTTGATTTGTTTTTTTTATCTTGTTATTATTTTTTTTG
AATTTTTTCTTTTATTAGTTATTGTATCTTTGTCGACTGTTTTTCTTCTT
CATTTCTTTTTTTTTTTTTTTCTTCTCTCTCCTATTTTTTTTCCTTTTCT
TTCTTTCCCTTTTTTTTTTTACTTTTTTTTTACCTTTTTCTTTTTTTCCC
TTATCAATTATTTATTTTGTTTTTTTTCTTTTTTTTTCTATTTTTCTCAT
TTCTCTCATCTTTCTTCTTTTTTTTTTATTCCTTTTTTATTTTTCTTTCT
TTCTTTTTTCTTATTTTCCTCAATTTTTT
CGCCTCTTTTTTTAAACAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTATAAAGACCGAGGAGTAAGTCA
GATGGTAAGAAACCTTCCATCCATGGAAAGATGCTTCGACTTATTCTATC
AGAGTGGAGTGCTGTGGCAGATGTTTAATTCAGAAATGGATATGGCCTGA
TTTAGATTTATTCTGACTTATTTTTGTTAATGTTATTATTAAAATTCCAT
AATCACATATATATCTGAGATCAGAATGCTGTGTCAGGCTTCTCCAACTG
TTGGACATTGTAAGAGGATGTCATCCTCTATAAAACCTGCCCTTACATCA
CATAATTCAGTTGCTGAAAAAATCATAGAAATCCTCAGAGGTTTTCTTCT
TTTTTTTAAACTTTATTTCATGTGTATGGATGTTTTTGCCTGCATAGTGT
GTGTACTATGTGCATGCAGTACCCAAACAGGCCAGAAGTGGGCGACAGAT
CCCCTGGAACTAGAGAGACAGTTCTGAGCTGCTATGTGGGTTCGGGGAAT
TGAAATTGGGTCCCCTGAAAAAGCAATTGGAAAAACGCTTTTAACCACTG
AGCCATCTCGCTATTCCTAACTTCATAGTTTTAAAATTGCTGTGTGCATG
TGTGCATGCATGTAGTGTATATACATGCATGCTGGCATATCTGTGTCCAT
AAATAATACATGATAGGCCCCTTACCCAATGAGCAAGCTACCAGCATGGT
AACTCTCATAGTGTTTTAAATAGATTTATAGTTCTGTGGGGGCCTTCATT
TGTAGTTGCCCTCAAATGTATGTGGTCCATGGGCCACAGGTTGAACATAC
CTGGTAGCTATTCAGTAAAGGCATTTCTTGTCTCTGCGGAGACTTAGGGG
TGCTATCTGATCTACCTTAGCTCATAGCACCCTGCAGACAGAAAAACAAT
ATTTTCCTTCTGGGGGAATGATTTTTGACTCCCTTCCTCATACTTTTTTT
GATCTACCGTTTGCTTGGAAACTTGTTTTCAAATGGCCCTGGCGGCCTTT
TTTTAGGCCATTTTTTCTTAAACCTTGTTGTCCACAGAATATTGTTTTAA
AAAAAATCTTTCCTTTTCATAGAAAATTTATAATTGTTGGCCTAAAAAAC
CTTCCTCTCTTGGTCTGGAAGAGTGGTCTTCTATCTATAAACGTGTTTTT
CTACTACCCCTTGTTATTTTCTTTGCCTCTTCGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_i07.g1 MSMg01no134_i07.g1 CHROMAT_FILE:
MSMg01no134_i07.g1 PHD_FILE: MSMg01no134_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:00 2005
         (768 letters)



>mm_chr7_6478940_6480106
          Length = 1167

 Score =  942 bits (487), Expect = 0.0
 Identities = 514/523 (98%), Gaps = 1/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagtaagtcagatggtaagaaaccttccatccatggaaagatgcttcgacttattcta 60
           ||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||
Sbjct: 522 aggagtaagtcagatggtaagaaaccttggagccatggaaagatgctttgacttattcta 463

                                                                       
Query: 61  tcagagtggagtgctgtggcagatgtttaattcagaaatggatatggcctgatttagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcagagtggagtgctgtggcagatgtttaattcagaaatggatatggcctgatttagatt 403

                                                                       
Query: 121 tattctgacttatttttgttaatgttattattaaaattccataatcacatatatatctga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 402 tattctgacttatttttgttaatcttattattaaaattccataatcacatatatatctga 343

                                                                       
Query: 181 gatcagaatgctgtgtcaggcttctccaactgttggacattgtaagaggatgtcatcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gatcagaatgctgtgtcaggcttctccaactgttggacattgtaagaggatgtcatcctc 283

                                                                       
Query: 241 tataaaacctgcccttacatcacataattcagttgctgaaaaaatcatagaaatcctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tataaaacctgcccttacatcacataattcagttgctgaaaaaatcatagaaatcctcag 223

                                                                       
Query: 301 aggttttcttcttttttttaaactttatttcatgtgtatggatgtttttgcctgcatagt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 222 aggttttcttc-tttttttaaactttatttcatgtgtatggatgtttttgcctgcatcgt 164

                                                                       
Query: 361 gtgtgtactatgtgcatgcagtacccaaacaggccagaagtgggcgacagatcccctgga 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 163 gtgtgtactatgtgcatgcagtacccaaacaggccagaagagggcgacagatcccctgga 104

                                                                       
Query: 421 actagagagacagttctgagctgctatgtgggttcggggaattgaaattgggtcccctga 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 actagagagccagttctgagctgctatgtgggttcggggaattgaaattgggtcccctga 44

                                                      
Query: 481 aaaagcaattggaaaaacgcttttaaccactgagccatctcgc 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  aaaagcaattggaaaaacgcttttaaccactgagccatctcgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1167
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1157
Effective search space:   877006
Effective search space used:   877006
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)