BAC Information

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BAC

Clone NameMSMg01-135D17
Chromosome7 (Build37)
Map Location 125,862,819 - 125,863,432
singlet/doubletsinglet
Overlap gene6330503K22Rik
Upstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16
Downstream gene9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135D17.T7 (MSMg01no135_d17.b1)MSMg01-135D17.TJ (MSMg01no135_d17.g1)
ACCAG341743AG341744
length715730
length of high quality
(start - end)
34 (120 - 153)614 (64 - 677)
definitionCHROMAT_FILE: MSMg01no135_d17.b1 PHD_FILE: MSMg01no135_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:18 2005CHROMAT_FILE: MSMg01no135_d17.g1 PHD_FILE: MSMg01no135_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCCAGAGGATGCGCGGAATTAAAAGGG
TTTCGCACTCAGACTTGCTGGCGATTATAAGAATGAGAGGGAGAAAGGCA
ATGCCACTATGAAGCCAAAGTGAAACATGGCTGCTGCCCACATTTCCCCA
TGCGCTGTTGTTCTTTCTTGAAGATTAAGAAACTTCCCTTCNCACCAGGN
TGTCCCCTTGATTCCCCGCCCGTCACCAACACTCTTCTATAAAACCATGG
GGGGGAAGTTAGCAAAGAGAATTCCCGTCGGNACCCAAACANTCACTTCA
GATTANGACTACTACCGGCCAACACCNGGATTACGACCCTGTTCCCGGAC
ACCCGAGGAAGTCTTCCAGACGGGTGCGGTCCCAGGAGNANCTCGATAGC
GTTTTCTTCCCTTCTNTTCTTTTCGTTGTNTTGGATGNNGAGATATATCG
AAAAAACAAAGAANGAGACACGAAAATGGGACGGAACGCATACCAGGTGT
AATCGGTTACTTTTAGATAACGGTGTGGGATTTAAAAGCGNGTAACAANG
TCTCTCCTAGNGATCCATTCCCGCCTCTTGTAGCCTGGGTTAAGTTGAGA
CTCCTACTTATTCGGTTGACTTTGGGGGGACAATGGAGGGGATAAAAAAA
TAGAAGTTTGGATTGGNCCCCCATCACCCTATNAATTTGGGTGTTTGAAG
CCTCTGGCAAAAGTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTATATAGACAGGGATTTCATGGACTACAGATATTT
GGAGGGCCTCTTTCCTCTAAGAAACTTGTGATTCAGTTATAGATTTAAGT
TTTTAAATTTAGTTTGTCTAACCTAAGGCACATTTTACTGGTATACTAAA
AACATAGCTGTTGAGTATTAAAGATATGAACTATGCAAGGTTCTATGGCA
GAATAGTCCGTGTCACTTAAGCCTGGGAGCATGTCCGTGGACCCCAGGAA
TATGCACTTCTTTAGGTTTATTTTCATTCTGAGGTTGTCACCATGTACAC
TTGTATTGTTTATCACCCAGTACCTAGAGATCATTATGTGTCTTGGGACT
TAGAAGGCGAAACTCAAGTGCCATATAGTCTAGCAAAACAAAACAAAACA
AAACAAAAGCCCATAAAAACAACCCCTCCAGATTTTTAGTATTCAGGATG
TAATGAGCTCTCACTTTTTCCTACTTGGTCTCTGAGGCCCACATCATGAG
TTGTTCTCATCCTACTGTGTCTGTCGGCTGCTGACCTACTTGTCTGAAAA
CATACAGCTTGCTGTCTTCACTGGCTGTCACTGATCTGATTAAAGTTCGC
TTTGTAAGCTGAGTTCTAAGTTGAAAATTTCTAATTGTTAGAAACATAAA
CAACATGGATGAACTATCATTTACTCCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_d17.g1 MSMg01no135_d17.g1 CHROMAT_FILE:
MSMg01no135_d17.g1 PHD_FILE: MSMg01no135_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:18 2005
         (614 letters)



>mm_chr7_125862619_125863632
          Length = 1014

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatatagacagggatttcatggactacagatatttggagggcctctttcctctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttatatagacagggatttcatggactacagatatttggagggcctctttcctctaagaa 260

                                                                       
Query: 61  acttgtgattcagttatagatttaagtttttaaatttagtttgtctaacctaaggcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgtgattcagttatagatttaagtttttaaatttagtttgtctaacctaaggcacat 320

                                                                       
Query: 121 tttactggtatactaaaaacatagctgttgagtattaaagatatgaactatgcaaggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttactggtatactaaaaacatagctgttgagtattaaagatatgaactatgcaaggttc 380

                                                                       
Query: 181 tatggcagaatagtccgtgtcacttaagcctgggagcatgtccgtggaccccaggaatat 240
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tatggcagaatagtccatgtcacttaaacctgggagcatgtccgtggaccccaggaatat 440

                                                                       
Query: 241 gcacttctttaggtttattttcattctgaggttgtcaccatgtacacttgtattgtttat 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacttctttaggtttattttcatcctgaggttgtcaccatgtacacttgtattgtttat 500

                                                                       
Query: 301 cacccagtacctagagatcattatgtgtcttgggacttagaaggcgaaactcaagtgcca 360
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cacccagtacctggagatcattatgtgtcttgggacttagaaggtgaaactcaagtgcca 560

                                                                       
Query: 361 tatagtctagcaaaacaaaacaaaacaaaacaaaagcccataaaaacaacccctccagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagtctagcaaaacaaaacaaaacaaaacaaaagcccataaaaacaacccctccagat 620

                                                                       
Query: 421 ttttagtattcaggatgtaatgagctctcactttttcctacttggtctctgaggcccaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttagtattcaggatgtaatgagctctcactttttcctacttggtctctgaggcccaca 680

                                                                       
Query: 481 tcatgagttgttctcatcctactgtgtctgtcggctgctgacctacttgtctgaaaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatgagttgttctcatcctactgtgtctgtcggctgctgacctacttgtctgaaaacat 740

                                                                       
Query: 541 acagcttgctgtcttcactggctgtcactgatctgattaaagttcgctttgtaagctgag 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 741 acagcttgctgtcttcactggctgtcactgatctgattaaagttggctttgtatgctgag 800

                         
Query: 601 ttctaagttgaaaa 614
           ||||||||||||||
Sbjct: 801 ttctaagttgaaaa 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)