BAC Information

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BAC

Clone NameMSMg01-135D18
Chromosome7 (Build37)
Map Location 128,887,878 - 128,888,443
singlet/doubletsinglet
Overlap geneScnn1g
Upstream geneE030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31
Downstream geneScnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135D18.T7 (MSMg01no135_d18.b1)MSMg01-135D18.TJ (MSMg01no135_d18.g1)
ACCAG341745AG341746
length711704
length of high quality
(start - end)
496 (38 - 533)566 (68 - 633)
definitionCHROMAT_FILE: MSMg01no135_d18.b1 PHD_FILE: MSMg01no135_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:18 2005CHROMAT_FILE: MSMg01no135_d18.g1 PHD_FILE: MSMg01no135_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCAGTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCACTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAG
ATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCATTTCTTCT
ACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGCGTCTTCAACTCTATTTCATTGGTCTACTTG
ATCTGCTCTATACCAGATACTTGCAGTTTTTATCACACCGCCCTTTTTCT
ATAGTTTTACGTTTGTTATTGTTATTTCTTCTCAATTTTCTTTACCCTTG
ATAACATTTTC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCATTGGCTTGGCATGGTGCTGCAGTATGCGTA
CCTGAACCGTCAGTATTCAGGAGGCCAAGATAGGAAGCTCACAAGTTTGA
GGCTACCCTGGGCTATCTGGCGAGACTCTATCTCCAAATAAACAGGGGCT
GGGAGCATAGCTTGGTAGCAGAGTGCTTTCCCCACCATATGCAAGGCCCT
TAGTTGGATCCTCAGAAGCACAGAAAAGATGTAGAGGATATGTTCTTGTG
AGGAAACCAAGCCAATCTGACACAGTCTTACCTTCCTTACCAAGTAGAAG
TTAGCAGAAAGAGAACTGTCATAAAGGACTGTGGTAGTTGTATGCACAGT
GTGTGTGTGGCTGGTGTGTGTACCCTCCCTAGACCAGATTCACTGGCTGA
AATGCCAGCCTCCATGTAAAGGTATTTGGAGATAGGGCACTAATTAAGGA
TCAATGAGGTCTTAAGGTCCTGGCTCTAATCTGATAGGCTTGGTATCCTT
ATAAAAAGGTGAGACATCACAGTACCCTCTTGAGAGAGAGGAAGGGTCAT
GTGAGGATACCTGCAAAAGATGGCCATCTGTGACCAAGAAGAGAAAGAAG
TCTTATCTGAATCCCACAGTGCCAGGACCTTTGACCTTGAATGGTCCATC
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_d18.g1 MSMg01no135_d18.g1 CHROMAT_FILE:
MSMg01no135_d18.g1 PHD_FILE: MSMg01no135_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:19 2005
         (566 letters)



>mm_chr7_128887693_128888658
          Length = 966

 Score = 1027 bits (531), Expect = 0.0
 Identities = 558/567 (98%), Gaps = 2/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattggcttggcatggtgctgcagtatgcgtacctgaaccgtcagtattcaggaggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccattggcttggcatggtgctgcagtatgcgtacctgaaccgtcagtattcaggaggcca 692

                                                                       
Query: 61  agataggaagctcacaagtttgaggctaccctgggctatctggcgagactctatctccaa 120
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 691 agataggaagctcacaagtttgaggccatcctgggctatctggcgagactctatctcaaa 632

                                                                       
Query: 121 ataaacaggggctgggagcatagcttggtagcagagtgctttccccaccatatgcaaggc 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 631 ataaacaggggctgagagcatagcttggtagcagagtgctttccccaccatatgcaagac 572

                                                                       
Query: 181 ccttagttggatcctcagaagcacagaaaagatgtagaggatatgttcttgtgaggaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccttagttggatcctcagaagcacagaaaagatgtagaggatatgttcttgtgaggaaac 512

                                                                       
Query: 241 caagccaatctgac-acagtcttaccttccttaccaagtagaagttagcagaaagagaac 299
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caagccaatctg-ctacagtcttaccttccttaccaagtagaagttagcagaaagagaac 453

                                                                       
Query: 300 tgtcataaaggactgtggtagttgtatgcacagtgtgtgtgtggctggtgtgtgtaccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtcataaaggactgtggtagttgtatgcacagtgtgtgtgtggctggtgtgtgtaccct 393

                                                                       
Query: 360 ccctagaccagattcactggctgaaatgccagcctccatgtaaaggtatttggagatagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ccctagaccagattcactggctgaaatgccagcctccatgtaaaggtatttggagatagg 333

                                                                       
Query: 420 gcactaattaaggatcaatgaggtcttaaggtcctggctctaatctgataggcttggtat 479
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcactaattaaggatcaatgagatcttaaggtcctggctctaatctgataggcttggtat 273

                                                                       
Query: 480 ccttataaaaaggtgagacatcacagtaccctcttgagagagaggaagggtcatgtgagg 539
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 272 ccttataaaaaggtgagacatcacagtaccctcttgagagagaggaagggccatgtgagg 213

                                      
Query: 540 atacctgcaaaagatggccatctgtga 566
           |||||||||||||||||||||||||||
Sbjct: 212 atacctgcaaaagatggccatctgtga 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)