BAC Information

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BAC

Clone NameMSMg01-135M14
Chromosome7 (Build37)
Map Location 50,848,175 - 50,848,360
singlet/doubletsinglet
Overlap geneZfp719
Upstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301
Downstream gene4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135M14.T7 (MSMg01no135_m14.b1)MSMg01-135M14.TJ (MSMg01no135_m14.g1)
ACCAG342158AG342159
length705736
length of high quality
(start - end)
187 (121 - 307)201 (116 - 316)
definitionCHROMAT_FILE: MSMg01no135_m14.b1 PHD_FILE: MSMg01no135_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:59 2005CHROMAT_FILE: MSMg01no135_m14.g1 PHD_FILE: MSMg01no135_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATAATTGCGGCGCCAATAGACTCCTANGTCGGAAGTCGTCGGAATTAT
ATACTGACANGACTAGGTATTTTGGAAAACCCAAGGAAGAAAATATTTTG
TTTTGTTTTCCCCTTTTTATTTCTGTTGCTAACAGTCATCAACATTTCAT
GGCTTGGAGGTATATCACCAAAATCTCTGACTTGATGATCCTGCCTTCCA
AATTTTTTGAGTTTCACATGGCTTTAATCATATCACTATTTTATTTAGGA
CCAACCCTGGCCAAGTTTGCCTACAGCCTAGGTACTTTTACAAAGAAGCC
ATTTCATGATTACATCTTCCGAGGTTCTGGAAGAACATGAATCACAGTTT
TATAACCCCACCGCGCAGACCTGGTACCAGTTCAAGAATATTCCGGGTTT
CTATCTCTCTCTCAAATGGCACCCTGATGTGATGAAGTCCAGGAATCCGA
GACTGTTCCAAAAAATCTGGAGAGAGGGTTAGGATGTCAAAACAGCTGCA
AAGTCTGTTGGCCACATTGCTAGTTACAAGCCCAATAAATATTTGTTCCT
TCATATATTGAACAATCGAAAGGTTAATATTATTATTATCATCTTGCATA
AAAGCAAAAGGAACAATTGAATGACCCAAAAACAGTTTGTTCACTCTTCA
GATAGTCTAACCATTTATACATACCTGACTCCTACTATTTTTTTATCCGC
CCACG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAAGTGGAGGTG
ACCTATAGATTGACTAGAGGAATTCCAGGGACCCAGCCTCAAAATACAAC
AGGAACAACAGAATAGAACTCCACAACTTGTCCAGTTCCACCACTGTGTG
ATAGCACATAGCCTGTTGATGTGTGTGGGGAACATGGATTAGTTAGTGCT
TGCCTAGCATGTGTGGAACCCTGGGTCTAATTACCAGTGTCACAGAAGGT
GTCCATGACGGCACACTCTTGTAAGGAGGATCAGGAGTTTAAGATCAGCT
TTTGCTACATAACATGTTTTTATTTCAGCATGAGCAACATGAGACTCTCT
TAGATGTCACACAATAAATAGTGTCATATGCCACTAATCCAAGGGCATAT
ACCTTTGAGCTTGAGCCCCGACTGTTTTATAGAGAGTTCCCCAGCCCATT
AGGGCTTTCATAGTGAGGCCCTGCCTTATAACGAAACATAACATAACAAC
ATGTTGCCAATCTACAAAATACTTGAATGGAATGGATACCCCCTTTAGTC
AAGCCTTAAATTCTTGACTTTCAATATCATTCCCAAACCCTGGTAACCCT
CCTTTTCCCCCCCTAATAATAGGTTTCCACATGGTATCCCGGGCCCGGCG
GGTTAAAACCTTCTATAAATCTTTTTCAAAAACACCGGGGGGATAAAACT
TTTTCATTCCTTTTTATAAAATTACCCCACGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_m14.b1 MSMg01no135_m14.b1 CHROMAT_FILE:
MSMg01no135_m14.b1 PHD_FILE: MSMg01no135_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:59 2005
         (187 letters)



>mm_chr7_50847909_50848496
          Length = 588

 Score =  302 bits (156), Expect = 1e-86
 Identities = 178/190 (93%), Gaps = 9/190 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgttgctaacagtcatcaacatttcatggcttggaggtatatcaccaaaatctctga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 452 ttctgttgctaacagtcatcaacattccatggcttggaggtatatcaccaaaatctctgc 393

                                                                       
Query: 61  cttgatgatcctgccttccaaattttttgagtttcacatggctttaatcatatcacta-- 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 392 cttgatgatcctgccttccaaattttttgagtttcacatggctttaatcatatcactaag 333

                                                                       
Query: 119 ---ttttatttaggaccaaccctggccaagtttgcctacagcctaggtacttttacaaag 175
                  ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 332 cag----atttaggaccaaccctggccaagtttgcctacagcctagttacttttacaaag 277

                     
Query: 176 aagccatttc 185
           ||||||||||
Sbjct: 276 aagccatttc 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 588
Length adjustment: 8
Effective length of query: 179
Effective length of database: 580
Effective search space:   103820
Effective search space used:   103820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)