BAC Information

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BAC

Clone NameMSMg01-137J13
Chromosome7 (Build37)
Map Location 142,495,084 - 142,495,646
singlet/doubletsinglet
Overlap genenone
Upstream gene4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254
Downstream geneFoxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137J13.T7 (MSMg01no137_j13.b1)MSMg01-137J13.TJ (MSMg01no137_j13.g1)
ACCAG343480AG343481
length734728
length of high quality
(start - end)
556 (123 - 678)651 (70 - 720)
definitionCHROMAT_FILE: MSMg01no137_j13.b1 PHD_FILE: MSMg01no137_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:20 2005CHROMAT_FILE: MSMg01no137_j13.g1 PHD_FILE: MSMg01no137_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGCAGTTGCCACTGGACAAGGATGCTCTTTTTGGTAAACAGAATGT
TGAGCCAATACAACAATGGCACGGAAGCTAAACGAACTTGCCTGGGCCCA
TTCTATTTTTCTGTCATCAAACACTGACCCAAGTGAGAAATTCACTTTAA
AAAATGGCTTCTGGCTCAAGATTTTACAGTGAGAACACATTTTTAAGTCC
CTCATGATAAACTTCCAATGGCAGTTACATAAAAATCACAAAAGAAAATA
AACTCTTGAGAAGCTGCCTTATAATATCCCATGAAGGGGGGGGTGGGGAT
CCCCAGAACTCTTTGAATTTTAGTCCTTCCTGGTGCTAAGTCACATGGTT
AATAAATAAAATGTGCCCAGGACACAACTTCAACAGAGTGAAGTGATTAG
AGCTTCCTCATCCAATGCTAGCTCACCAGGTAGTGATATCATTGTTCTCA
AATGTTAACTTTTAGCTCCACATGACACCCTGAGCTCCCCTTCTACTTCC
TTCCAACAGAAATTGGGGCCTAGAGAGATGGTTCACTCTGTAAAATACTT
GCTAGGCAAACATGAGGATCTGAGTTTGATTCCCAGCATAATCACAGCAC
GGGGGTAAATGGTGACAGACGGCTTCTCATGACTCAGTGGCCAGTCTAGC
TGAACTGGTGAGTTCCAGGACAGTGAGAAGCCCG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTATGATTTCTTTTGAGGCTTGATCATTTT
CAGCAGCCCAGGCTGGCTTCACATCTACTGTGTGACCCAGGCTGGGTTTG
AGTTTGGCAATCTTCCTGCATCTACTTCTGAGGACTGGGATGACAGAATG
GAGTCACCTGGCATTTATTTTCCAAGTCTTTGATGACGATGATGGTGACC
ACGATGACGGCGATGATGTTGATGATGATAATGATGGTGACTTGGACACT
GGCTGGCCTGGAACTTGTTAGGCAGAAGAGACTGGACTAGAACTAATAGA
GACCCAACTGCACCTGCTTCCTGAGGACTGGAATTAAAGTATGCACCCTC
ACGCCTAGTCACCTGACCAATTCTTAAGAGTAATGCACTTACAAAAGTCA
CTTAATTCATTGCTAATTTCATATTATTGGCGCTATCTCTTTCCTCTCGC
TACCATTATTAATTTTATATACTTAATGTTTCAATACACTGTAATTAAAT
GATTCTTGTATTGTTCAAAAGCAGTCCTGAGTCTTTCCATGGGGCTCTGC
CAGCGGTGAGTGCACCCTCAGTTTTGGCACAAGCTGTCCCAGCCTTACTA
TACGCTTCCCTGACCCAGATTGTCTGACCAGCCAGGTCCTGGCTCTTTTT
CCACTGGAGCATTAATACAAAACCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_j13.b1 MSMg01no137_j13.b1 CHROMAT_FILE:
MSMg01no137_j13.b1 PHD_FILE: MSMg01no137_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:20 2005
         (556 letters)



>mm_chr7_142494884_142495838
          Length = 955

 Score = 1009 bits (522), Expect = 0.0
 Identities = 550/564 (97%), Gaps = 9/564 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagctaaacgaacttgcctgggcccattctatttttctgtcatcaaacactgacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ggaagctaaacgaacttgcctgggcccattctatttttctgtcgtcaaacactgacccaa 260

                                                                       
Query: 61  gtgagaaattcactttaaaaaatggcttctggctcaagattttacagtgagaacacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagaaattcactttaaaaaatggcttctggctcaagattttacagtgagaacacattt 320

                                                                       
Query: 121 ttaagtccctcatgataaacttccaatggcagttacataaaaatcacaaaagaaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtccctcatgataaacttccaatggcagttacataaaaatcacaaaagaaaataaa 380

                                                                       
Query: 181 ctcttgagaagctgccttataatatcccatgaaggggggggtggggatccccagaactct 240
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctcttgagaagctgccttaaaatatcccatgaaggggggg-tggggatccccagaactct 439

                                                                       
Query: 241 ttgaattttagtccttcctggtgctaagtcacatggttaataaataaaatgtgcccagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgaattttagtccttcctggtgctaagtcacatggttaataaataaaatgtgcccagga 499

                                                                       
Query: 301 cacaacttcaacagagtgaagtgattagagcttcctcatccaatgctagctcaccaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 cacaacttcaacagagtgaagtgattagagcttcctcatccaatgctagctcaccgggta 559

                                                                       
Query: 361 gtgatatcattgttctcaaatgttaacttttagctccacatgacaccctgagctcccctt 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgatatcattgttcccaaatgttaacttttagctccacatgacaccctgagctcccctt 619

                                                                       
Query: 421 ctacttccttccaacagaaattggggcctagagagatggttcactctgtaaaatacttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctacttccttccaacagaaattggggcctagagagatggttcactctgtaaaatacttgc 679

                                                                       
Query: 481 taggcaaacatgaggatctgagtttgattcccagcat--------aatcacagcacgggg 532
           |||||||||||||||||||||||||||||||||||||        |||||||||||||||
Sbjct: 680 taggcaaacatgaggatctgagtttgattcccagcatgcatttataatcacagcacgggg 739

                                   
Query: 533 gtaaatggtgacagacggcttctc 556
           |||||||| |||||||||||||||
Sbjct: 740 gtaaatggggacagacggcttctc 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space:   515970
Effective search space used:   515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)