Query= MSMg01no138_i09.b1 MSMg01no138_i09.b1 CHROMAT_FILE:
MSMg01no138_i09.b1 PHD_FILE: MSMg01no138_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:35 2005
(494 letters)
>mm_chr7_117365524_117366416
Length = 893
Score = 917 bits (474), Expect = 0.0
Identities = 486/490 (99%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 5 gaattctggatctctggaagagcagtcgcccctaaccacggagcatccatctctccaaga 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattctggacctctggaagagcagtcgcccctaaccacggagcatccatctctccaaga 691
Query: 65 ccccgtatattactttttttaaagtaaaagtatgtgactaatttccatcggtccttccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ccccgtatattactttttttaaagtaaaagtatgtgactaatttccatcggtccttccag 631
Query: 125 actatgatttaatgaataagatcaaaaggaaaacaagtgagcccgccagatcctgctggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 actatgatttaatgaataagatcaaaaggaaaacaagtgagcccgccagatcctgctggc 571
Query: 185 aataaaagtcactactgaaaagaacttcctcatttactacacaaaatatacaaagcaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aataaaagtcactactgaaaagaacttcctcatttactacacaaaatatacaaagcaaac 511
Query: 245 ccaaacttcggaaattttttttcttagaatattgctaagaaaacccagtcattcagatcc 304
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 510 ccaaacttcggaaattttttttcttagaaga-ggctaagaaaacccagtcattcagatcc 452
Query: 305 aaaatgtgtatattttaaaaatgcctgttgaatggctcctcttgtctgtttctatatttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaaatgtgtatattttaaaaatgcctgttgaatggctcctcttgtctgtttctatatttc 392
Query: 365 aggcttttcaagacgctgccaatttctcctggctgggtgccactttggggtttactcgac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aggcttttcaagacgctgccaatttctcctggctgggtgccactttggggtttactcgac 332
Query: 425 ttacaagtatccctttatgcgtacctcatactctggagtctttaggcagccctgaggagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttacaagtatccctttatgcgtacctcatactctggagtctttaggcagccctgaggagg 272
Query: 485 actctgcaaa 494
||||||||||
Sbjct: 271 actctgcaaa 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_i09.g1 MSMg01no138_i09.g1 CHROMAT_FILE:
MSMg01no138_i09.g1 PHD_FILE: MSMg01no138_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:35 2005
(354 letters)
>mm_chr7_117225588_117226341
Length = 754
Score = 661 bits (342), Expect = 0.0
Identities = 350/354 (98%), Gaps = 3/354 (0%)
Strand = Plus / Plus
Query: 1 ttaatctgagggaaaggatggtgaccctgaaaaaggtgaaaggagtcattatctgggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatctgagggaaaggatggtgaccctgaaaaaggtgaaaggagtcattatctgggcct 260
Query: 61 tatcttaaattcctaaaatttcatccaacttgctgtttttgaatgtgaactttccaaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcttaaattcctaaaatttcatccaacttgctgtttttgaatgtgaactttccaaggt 320
Query: 121 gaagtcacagaaatatgcacagtagcctagatcaccaaccctctcagtttcagagattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtcacagaaatatgcacagtagcctagatcaccaaccctctcagtttcagagattac 380
Query: 181 ctgagtaacaaggttattgtcctaggattacacatttgataagtagcaaaattgagaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagtaacaaggttattgtcctaggattacacatttgataagtagcaaaattgagaaca 440
Query: 241 gaccctgtctgggcagtggtggcgcacgcctggtctacagagtgagttacaggacagcca 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccctggctgggcagtggtggcgcacgcctggtctacagagtgagttacaggacagcca 500
Query: 301 gggctacacagagaagaaaccctgggggggggggcaaggaagggagggagggag 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gggctacacagagaagaaaccctgggggggg---caaggaagggagggagggag 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space: 257025
Effective search space used: 257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
