Query= MSMg01no139_h21.b1 MSMg01no139_h21.b1 CHROMAT_FILE:
MSMg01no139_h21.b1 PHD_FILE: MSMg01no139_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:54 2005
(592 letters)
>mm_chr7_29740076_29741067
Length = 992
Score = 1062 bits (549), Expect = 0.0
Identities = 579/589 (98%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacagagatccacctcgcctctgccttctgagtcctgggattaaaggcgtgtac 63
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 877 ggaattcacagagatccacct-gcctctgccttctgagtcctgggattaaaggcgtgcac 819
Query: 64 caccatgcctgacactaaaagcctttttttaaaaaggggagatctgtatggtgtttgaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 caccatgcctgacactaaaagcctttttttaaaaaggggagatctgtatggtgtttgaca 759
Query: 124 gatttggtttccctggctgtacataaaaggaaactgtaaaaataaatccatggagagcga 183
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 758 gatttggtttccctggctatacataaaaggaaactgtaaaaataaatccatggagaacga 699
Query: 184 aagaatgtcaagttccagtggggtcctcttcctgccaaaggcgctggctggcctaaggcc 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 698 aagaatgtcaagttccagtggggtcctattcctgccaaaggcgctggctggcctaaggcc 639
Query: 244 agcttcctttgttcagaggggtggtgcatgctggtgggcattgaagacccatgtggcaag 303
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 638 agcttcctttgttcagaggggtggtgcatactggtggggattgaagacccatgtggcaag 579
Query: 304 agacttctgaaatcaccaggttaactggtgactgacttgaagggacaaatcctttttgtg 363
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atacttctgaaatcaccaggttaactggtgactgacttgaagggacaaatcctttttgtg 519
Query: 364 gctctacagagggtctgtggaggaacatccctagtgcctgccacactcatctgaccctag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gctctacagagggtctgtggaggaacatccctagtgcctgccacactcatctgaccctag 459
Query: 424 gaacatgtccggaagtgggcagagcagtgactcacccagggggtactcagtcccttgaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaacatgtccggaagtgggcagagcagtgactcacccagggggtactcagtcccttgaat 399
Query: 484 gtcccacgagatttgctcaggattggatgatacttgattcatccttgctcagcccccctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtcccacgagatttgctcaggattggatgatacttgattcatccttgctcagcccccctc 339
Query: 544 ccatttttgctttctgtttctcttttatgggataggctctggtttaaac 592
||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 338 ccatttttgttttctgtttctcttttatgggataggctctgatttaaac 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_h21.g1 MSMg01no139_h21.g1 CHROMAT_FILE:
MSMg01no139_h21.g1 PHD_FILE: MSMg01no139_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:55 2005
(651 letters)
>mm_chr7_29641292_29642342
Length = 1051
Score = 1205 bits (623), Expect = 0.0
Identities = 644/651 (98%)
Strand = Plus / Plus
Query: 1 tctgtcttccaccattctttatttttgcctttgcagcgggatcttggtgtggagctcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtcttccaccattctttatttttgcctttgcagcgggatcttggtgtggagctcagg 260
Query: 61 ctggctttgaggtcctggttctctggcctcagtttcccaagtgtgggaatacagaagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctttgaggtcctggttctctggcctcagtttcccaagtgtgggaatacagaagtgt 320
Query: 121 gccgccacacccagcttcctcccactctcacatagccaaagatacacaggcatgaaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgccacacccagcttcctcccactctcacatagccaaagatacacaggcatgaaatct 380
Query: 181 aatacatgaggccgaggatgtgtttagctgatagagtgcctacttagcacgcatggagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacatgaggccgaggatgtgtttagctgatagagtgcctacttagcacgcatggagcc 440
Query: 241 ctgggtttgatgcccagcatagaacaaaatagatgtaggggtgcatgcctaagatctcgg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ctgggtttgatgcccagcatagaacaaaatagatataggggtgcatgcctaagatctcgg 500
Query: 301 cacttgaaaggcaggggtaggagggtcaggggttcaagaccagcctcagctctgcaggaa 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttgaaaggcagaggtaggagggtcaggggttcaagaccagcctcagctctgcaggaa 560
Query: 361 gttccaggccagcctgggctacgtaagagtgtctcaaatttgtttttaaataaatggttt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttccaggcctgcctgggctacgtaagagtgtctcaaatttgtttttaaataaatggttt 620
Query: 421 cataacgaacagtttaatgaagcatctggggaaaagaggctgctttgccctttcacctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataacgaacagtttaatgaagcatctggggaaaagaggctgctttgccctttcacctcc 680
Query: 481 ccgctgtcctttccacagagggcaaacacttttaattggaccttttaagtctacctaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccgctgtcctttccacagagggcaaacacttttaattggaccttttaagtctacctaaca 740
Query: 541 atgtgataaccacagaactaatgcacttcctgttccttccagggtttaccgatggaagtg 600
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 atgtaataaccacagaactaatgcacttcctgttccttccagggtttacccatggaagtg 800
Query: 601 gcactatggacgatggggacatagctttctctctcactgtcgcacgcccct 651
|||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 801 gcactatggacgatagggacatagctttctctctcactgtcccacgcccct 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
