BAC Information

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BAC

Clone NameMSMg01-139K12
Chromosome7 (Build37)
Map Location 112,510,250 - 112,510,850
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691
Downstream geneOlfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139K12.T7 (MSMg01no139_k12.b1)MSMg01-139K12.TJ (MSMg01no139_k12.g1)
ACCAG344999AG345000
length715705
length of high quality
(start - end)		373 (39 - 411)597 (70 - 666)
definitionCHROMAT_FILE: MSMg01no139_k12.b1 PHD_FILE: MSMg01no139_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:07 2005CHROMAT_FILE: MSMg01no139_k12.g1 PHD_FILE: MSMg01no139_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCATXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAGAGGATCCGC
GGAATTCTTTGTCCAGCTCTGTACCCCATTTTTTAATGGGGTTATTTGAA
TTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGAATATTAGTCT
GCTATCAGATTTAGGATTGGTAAAAATCCTTTTCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTGTCAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTCAATTATTGTTCTTACAGCACAAGCCATTGTTGT
TCTGTTTAGGAATTTTTTTCCCCAGTGTCCATATCTTCTAGGCTTTTCCC
CACTTTCTCTTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCCT
TGATCCACTTACACTTGAGCTTTGTACAAGGAGATAGTACTGGATAAATT
CTCATTCTTCTACATGATAACCACCAGTTGCGCCAGCATCATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTCTAGCTCCCTTGCCATAGATTA
AGTGACCACTATTTGTGTGCCTTCATTTCCCGCTTTTCTATTCTATTCCT
CTGATCCTAATCTTGCCTGTCCCTGCTACAGCACCATGCATTTTTAATCA
CCTATGCCCCGCAATTTAATCTCTACCCTACTCCTGCCTGTTTCTCCCTC
ACCCTATCTTTTCGC

NCCGATGAAGTGGTAGGCCTGGCGGCCGCCCTTCAAAAAATTTAGGTGAC
CTATAGAATGCCACACGGAATTCTGTGTCTAGCATTAGTAGTGTTCCTGC
TTATAAGTCACCTATACAGTGAGTTAAGAGGGAAGGAGAGTCTGGTGGGA
ACAGTAAAAGTACTGTCCAGTACCTCAGAGAAATCTTGTCTGTTGTTTTG
CAACAGTCTCACTCTCAAGCTCAGGCTAGCATTAAACTAACAGTAATCCC
ATGCTCCTGCTTTCCAAGTGCTAACACTACATGCATGAGTCACCATGCCT
GGGTGGGAAGTGATTTCTTGACGGCCTCAGCCAAATTCCAATAAAAGGAG
TCACTTCAGGACCCTTCTTCTAAAAGCTAAAGAACCTTTACAAGAACCCA
TATCTCCTATAAGCTTTTAGAGACACCCCAGTACAAGTCTATGTTTTCAG
TTAATAATAGTATAAATAATAAATAGATAATCAATTCTCTTCTGTGCCTC
TACTGGAAAGAAAAGAATATTCTGTATGTTAAAGGGGTTCCTTGGTGCTG
TAACCCAGTCTCACAGGTACAGTTTGCACCAGGAGACTGTGGCATCAGCA
TGCAGGATAATGTCACTAGTTAAATATGGTCAAAGATGGTGTCAGCCTCG
GAATTCTATAATTAGAAAGGACAATTCTATTGCAGAGGAAGAAAAAATAT
ATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_k12.g1 MSMg01no139_k12.g1 CHROMAT_FILE:
MSMg01no139_k12.g1 PHD_FILE: MSMg01no139_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:07 2005
         (597 letters)



>mm_chr7_112510050_112511046
          Length = 997

 Score = 1075 bits (556), Expect = 0.0
 Identities = 589/602 (97%), Gaps = 6/602 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtgtctagcattagtagtgttcctgcttataagtcacctatacagtgagttaaga 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtgtctagcattagtagcgttcctgcttataagtcacctatacagtgagttaaga 260

                                                                       
Query: 61  gggaaggagagtctggtgggaacagtaaaagtactgtccagtacctcagagaaatcttgt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaggagattctggtgggaacagtaaaagtactgtccagtacctcagagaaatcttgt 320

                                                                       
Query: 121 ctgttgttttgcaacagtctcactct-caagctcaggctagcattaaactaacagtaatc 179
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 321 ctgttgttttgcaacagtctcactctaca-gctcaggctagcattaaactaacagtaatc 379

                                                                       
Query: 180 ccatgctcctgctttccaagtgctaacactacatgcatgagtcaccatgcctgggtggga 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ccatgctcctgctttccaagtgctaccactacatgcatgagtcaccatgcctgggtggga 439

                                                                       
Query: 240 agtgatttcttgacggcctcagccaaattccaataaaaggagtcacttcaggacccttct 299
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 agtgatttcttgacggcctcagccaaactccaataaaaggagtcacttcaggacccttct 499

                                                                       
Query: 300 tctaaaagctaaagaacctttacaagaacccatatctcctataagcttttagagacaccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctaaaagctaaagaacctttacaagaacccatatctcctataagcttttagagacaccc 559

                                                                       
Query: 360 cagtacaagtctatgttttcagttaataatagtataaataataaatagataa----tcaa 415
           |||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||
Sbjct: 560 cagtacaagtctatgttttcagttaataatagtataaataataaatggataaataatcaa 619

                                                                       
Query: 416 ttctcttctgtgcctctactggaaagaaaagaatattctgtatgttaaaggggttccttg 475
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcctcttctgtgcctctactggaaagaaaagaatattctgtatgttaaaggggttccttg 679

                                                                       
Query: 476 gtgctgtaacccagtctcacaggtacagtttgcaccaggagactgtggcatcagcatgca 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgctgtaacccagtctcacaggtacagtttgcaccaggagactgtggcatcagcatgca 739

                                                                       
Query: 536 ggataatgtcactagttaaatatggtcaaagatggtgtcagcctcggaattctataatta 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 740 ggataatgtcactagttaaatatggtcaaagatggtgtcagcctcggaattctacaatta 799

             
Query: 596 ga 597
           ||
Sbjct: 800 ga 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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