BAC Information

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BAC

Clone NameMSMg01-139P03
Chromosome7 (Build37)
Map Location 131,483,012 - 131,483,336
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneArhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999, LOC670828, 4933440M02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139P03.T7 (MSMg01no139_p03.b1)MSMg01-139P03.TJ (MSMg01no139_p03.g1)
ACCAG345218AG345219
length709707
length of high quality
(start - end)
92 (74 - 165)329 (72 - 400)
definitionCHROMAT_FILE: MSMg01no139_p03.b1 PHD_FILE: MSMg01no139_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:30 2005CHROMAT_FILE: MSMg01no139_p03.g1 PHD_FILE: MSMg01no139_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAACTGGGCGGAATTC
TTCTGGGAATTCAACTATTAGAATAGCATGTTGGTTACAAGGTAAAGGTG
CAGATTTCTAGAGCACACACATTTTTGTCAGCCTTTATCCAAGCCCTTGA
TGAAAATTCTCAATGAGTCTTGGGCTGAGAGTGTCCTGTCTCCTTGCTAA
CGTGATGAACAGTGTCTTATGCTGCTGATGTCAGGTCCTGCAAGAAAAGC
TTTATCATCTACGTGTTTCAGGAATAGTAAGCATGACACATCTCTCAGCT
AGGTGTTCTAGCTGGTTTTATAATTTTTAACCCCGGAGATCTTACAGAAA
TAAGACTGTCACTGATTCCTCCCCCTTCACCTAAATTTTCCATTGTTTAC
TCTTGTTTAACGCTAATACCTTTCAGACCTTTGCGCTTCATTTATCTCTG
ACAACTTCTAGAGCTCCTTCTCATTTTGTTTGATGTGTCCCTGTCCACCA
TTTCCCCCCCACCCTCCCCTTTCCCCATATGCTTCCCCTTCCTACACTTT
CCCTTATTATTATTTTCTCCTGCCCATTCATACCCCTATTGCCTCTTTCC
CCCCTTATACCTGTCCTTCCCCCCGTTCCGTCGCGTTTCCCTTTGTTTTT
TTTTTTCCCCTTCTTTTTTCCCCCCCCTCCCCCACCGTTTTTATCCTTTT
TTCCTTTAT
AATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTGGGTAATGTTTTAAGCAAGGAGAAC
TAACTCTGCTTTGTTACTGGCTAGTGACATCTATTTTTTGATGGTTTTTC
AGGATCACCTCAGTCATAGAGGACAGTGACTTCTGCCCATGGTCTTGTAG
ATGCAACTGGGTACCAGTGAAGCAACAGAAATTGACAGACCACACAACCA
ATCAGTGACAGAATGAAGTTGCACCAGAGCATCTTTGACTGCATAGAGAG
AGGGGACGAATTATTCTACACTATTAGTGACTGGAGCTGGGTGTTAAAGG
ACCAGACTTCTACTGAGTCTGACCCAGCACTTCTTTCCAGCAAGAGTTTA
GGAACACGTTGGTTGCAACCAGTTTTGGGTACGTTAGAAATTCCATTTGC
TCATAAAGTATGAAGATTTTTCTCTAGATTCCATGCTTGTTTATGGAGAT
TCAGAAGTATTTTTAAGAGGGATTATGAAAGATGCGTTACCTCTTCTTGT
CCACCCCTGCGTTTATGACCAGTTTTCCTCTTTCCTCTACCTATAACCCC
ATATGTTGGCCCCTTATTTTCTACCTGTGTATACTCCTATCGTTTACACG
TCTCTCTCCATCTGCAATAATTGCCCAAGTTCCCCGTTTCTGATTCCCTT
TTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_p03.g1 MSMg01no139_p03.g1 CHROMAT_FILE:
MSMg01no139_p03.g1 PHD_FILE: MSMg01no139_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:30 2005
         (329 letters)



>mm_chr7_131482812_131483540
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgggtaatgttttaagcaaggagaactaactctgctttgttactggctagtgacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcttgggtaatgttttaagcaaggagaactaactctgctttgttactggctagtgacatc 466

                                                                       
Query: 61  tattttttgatggtttttcaggatcacctcagtcatagaggacagtgacttctgcccatg 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 465 tattttttgatggtttttcagggtcacctcagtcatagaggacagtgacttctgcccatg 406

                                                                       
Query: 121 gtcttgtagatgcaactgggtaccagtgaagcaacagaaattgacagaccacacaaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtcttgtagatgcaactgggtaccagtgaagcaacagaaattgacagaccacacaaccaa 346

                                                                       
Query: 181 tcagtgacagaatgaagttgcaccagagcatctttgactgcatagagagaggggacgaat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 tcagtgacagaatgaagttgcaccagagcatctttgactgcagagagagaggggacgaat 286

                                                                       
Query: 241 tattctacactattagtgactggagctgggtgttaaaggaccagacttctactgagtctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tattctacactattagtgactggagctgggtgttaaaggaccagacttctactgagtctg 226

                                    
Query: 301 acccagcacttctttccagcaagag 325
           | |||||||||||||||||||||||
Sbjct: 225 atccagcacttctttccagcaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)