BAC Information

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BAC

Clone NameMSMg01-140A14
Chromosome7 (Build37)
Map Location 93,861,676 - 93,862,140
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292
Downstream geneFolh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140A14.T7 (MSMg01no140_a14.b1)MSMg01-140A14.TJ (MSMg01no140_a14.g1)
ACCAG345287AG345288
length714715
length of high quality
(start - end)
498 (42 - 539)334 (72 - 405)
definitionCHROMAT_FILE: MSMg01no140_a14.b1 PHD_FILE: MSMg01no140_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:38 2005CHROMAT_FILE: MSMg01no140_a14.g1 PHD_FILE: MSMg01no140_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCCGCGGAATTC
CCCTTTTATTACCCAAAATGCTTGACCCTGGGACAATAGAAGAACAGAGA
TTCTTCACAGCACAAAAACTAAGTTTGGTGGTCCAAAGAACTTTATTAAT
TGCCACAGTTATTGTTAGGGGTCTTTAAATGATGGCTACTAAAATATAGA
TTTAGGTATTTCAGTCTGCACATTTTTTCTCTAAAAATCAAAAGCTCTAA
CTCAAAAACAATAAATTAGAACAATATGGAAAATACTTGATGTGTTGTCT
GAGAACTACTAAATAATAATAAAAGAATTCTGGGTTGGTATCATATAAAA
ATTAAAGTATTGGACAGTATAAAAGAAAAGAGATATCCTACATGAAATAG
AGTCTAGGCAGTTTCATGAAAGGAGTTGATACTAGCATATGAAAAAAACA
TGCACAGATGGTAAGGTTGGTGTCAGAAGATTACAATGTTATTGAGTGAA
TACTGAGTTGATAAGCATGTTTATTGATAAAGAAACTGAGAAAAAGATTG
ACACTCAACAAAACATGTTGACCCTTTAAGAATTATTTTTGCTGTTTAGC
AAGAAACCATTGCTGTATATATTTTGGGGATAGATAATAAATACATGAGG
TTTTTTTTTCATTCTGTGAGAACACTGTTGCTATTATCCATTTACAACAA
TCAGATTATCACAT
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCCAATTCATATTATGGACATTTGTGATTTCCCTTTAA
AAGCTCTTTATCAATGTCAGTTTATTTCTTGGAGTGTTTGAACTTAGTGT
GATTTGGGGAATATTTATTTTTATTTTTATTTTATTTTTAATTCACTTTT
TTAACTTTTTAAAAAATATTTGTTTATTTTATGTATATGAGTATGCCATT
ATTCTCTTCATACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGT
TGTGACCCACCATGTGGTTACTGGTAATTTAATTCAGTACCCCCGGAAGA
GCAGTCAGTGCTCTCAACCACTGAGCCATCTCTCCAGCCCTAACTTTTTT
AAAGATCTCGAAAAACATATAAACGAACTACCTTTCTACCTGTTTTGTAC
CTCTTTTCCTTTCTCTACCTTCTCTCATTTGATTCGAGAACACACGGTTT
TAGTGTATATTTCATCTATCCCATATCTCTTTTTTCTTATGGTAAGATTT
CTCCTCATCATCTCATCATTTTCATGTACCTTCATTTTCACTAACATGAC
TCCTAGTCTTATTTCTATATACCACTCCCCACACTTTTCCTTCTACCCTC
TGACTGTCTCAAGCCCCATCATTTCTTCCTACCTTATCTTTACTCTATCC
TCACTCTCTCACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_a14.b1 MSMg01no140_a14.b1 CHROMAT_FILE:
MSMg01no140_a14.b1 PHD_FILE: MSMg01no140_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:38 2005
         (498 letters)



>mm_chr7_93861442_93862340
          Length = 899

 Score =  719 bits (372), Expect = 0.0
 Identities = 442/466 (94%), Gaps = 3/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 35  ccctgggacaatagaagaacagagattcttcacagcacaaaaactaagtttggtggtcca 94
           ||||| || ||||||| |||||| ||||||||||||| || |||||||||||||||||||
Sbjct: 235 ccctgtga-aatagaaaaacagatattcttcacagcataagaactaagtttggtggtcca 293

                                                                       
Query: 95  aagaactttattaattgccacagttattgttaggggtctttaaatgatggctactaaaat 154
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aacaactttattaattgccacagttattgttaggggtctttaaatgatggctactaaaat 353

                                                                       
Query: 155 atagatttaggtatttcagtctgcaca--ttttttctctaaaaatcaaaagctctaactc 212
           ||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||||| 
Sbjct: 354 atagacttaggtatttcagtctgcacattttttttctctaaaaatcagaagctctaactt 413

                                                                       
Query: 213 aaaaacaataaattagaacaatatggaaaatacttgatgtgttgtctgagaactactaaa 272
            ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 414 gaaaacaataaattagaacagtatggaaaatacttaatgtgttgtctgagaactactaaa 473

                                                                       
Query: 273 taataataaaagaattctgggttggtatcatataaaaattaaagtattggacagtataaa 332
           ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 474 taataataaaagaattctgggttggtatcatataaaaattaaagtgtttgacactataaa 533

                                                                       
Query: 333 agaaaagagatatcctacatgaaatagagtctaggcagtttcatgaaaggagttgatact 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agaaaagagatatcctacatgaaatagagtctaggcagtttcatgaaaggagttgatact 593

                                                                       
Query: 393 agcatatgaaaaaaacatgcacagatggtaaggttggtgtcagaagattacaatgttatt 452
           |||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct: 594 agcatatgaaaaaagcatgcacagatggaaaggttggtgtcagaagattacactgtaatt 653

                                                         
Query: 453 gagtgaatactgagttgataagcatgtttattgataaagaaactga 498
           |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 654 gagtgaatactgagttgataagtatatttattgataaagaaactga 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space:   433832
Effective search space used:   433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)