BAC Information

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BAC

Clone NameMSMg01-140K08
Chromosome7 (Build37)
Map Location 136,167,778 - 136,297,010
singlet/doubletdoublet
Overlap geneLOC100043144
Upstream geneEG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
Downstream genePpapdc1a, Brwd2, LOC100043150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140K08.T7 (MSMg01no140_k08.b1)MSMg01-140K08.TJ (MSMg01no140_k08.g1)
ACCAG345726AG345727
length711716
length of high quality
(start - end)
251 (69 - 319)217 (72 - 288)
definitionCHROMAT_FILE: MSMg01no140_k08.b1 PHD_FILE: MSMg01no140_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005CHROMAT_FILE: MSMg01no140_k08.g1 PHD_FILE: MSMg01no140_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,167,778 - 136,168,028)(136,296,794 - 136,297,010)
sequence
TATATTTGCGGCGCTAAACGACTCCTATATTCAGAGATGCGCGGAATTCT
TTCTGCTTTTCACTTGACAAGCATCCCCCCGCCAGTGTGTTTGTAATGGA
GCCATCTTTTAGGTATATTTTTGGGGAGTTCTGCACCCTGCTCTGGAACT
GAGGTGTTATTAATTGACACTCTGAATCTTGATTTATCTTATTCTATATT
GCATGGTCATCGGCAGCTCCTCTAATAAGCTATGGGGTACAACTGTTACC
TCATCTCATTGGCATGGAAGAGTCTTTTGTTTTTTAAAGAGTAAGTTCTG
GAGGGATAGATTTCAAGGTATTTAGTAAAGCACATGCCATACAAAAGCAC
TTTCTCTTACCACAGCTAAAGGGAAAGCTGCATATGAGGTTTGGATGACT
TTGGTCTGGATCATTTCTGAAGGGTAACGTGCTAGCATATGTGCAGCTTG
GTTTTCATGTGTTTCCTGAACAACTAGAACGGGTTATCCCAGTGGTAGAG
GATGAATCTATCCTCATATATACTTGACGTGTTACCTTCAAGGTTATTCC
ATTGGGCCCTTAACCTGCTCAAATGATAAAGTATCGCCATGCTAATATGA
TTGTTTTTATTCCCGTTCTCTTTTACCCCTATTTTTTTTCCTATTTTCCC
ATATAATTTACCCCATTTCACCCTTTTTCCTTTTTCTCTTCTCCCCCCCT
TTTTCCCAGCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCTACTCCTACCCCTTCTCCATCCCAG
AGAAGAGTCTGAGCATCCTTGCTCCTTCCAGCAAGCGAAAAGGAACTCTG
ACTGCCAGCATGTAGCGCCCACATGGTCGCAAGGAGTCAGAGCTGTCCCT
ACCATCATTGCCATTCCTACTATTCAAACATGGTGTTTTCAAGAGCATCA
TCAGTCCCAGGAAGGGGAGTCAGTATGATTCTGGTAAAATAAGAGAGGGC
AGAGTCAGCTCATTATATAGATATCAACGACATTCTTCACAAACGGTACC
TGTGCGGTCATGTCACACAGTACAGTAGTGTTCACTTTCTGTGTCGCGCA
GATGTGCCCTATGGCCTCTTACTTTTTCCACGCTTGCCTAGCCCTCAGCT
CTTCCTCTTGCTCTCTCCTGTCACCTCACCTCCTACACTCTCTCCCTACC
GTCTCTGCTTCATCTCATTCTGGTCAATCTCAGACAGATGGCCTCTCCTT
ACTGTAATCCTGTCCTCAACTACCTCTCACCTCTACCCCTGCCTCTCTGA
TCTCATCCACTCTTTCCTACATCAGCTCCTCGATTCGTCCTACTTACCTG
CGACGTCAATTCTCACTATACTCTTCTCCTCCCATTTCCTCCCCTCCTGC
TCCCTCTTCTCGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_k08.b1 MSMg01no140_k08.b1 CHROMAT_FILE:
MSMg01no140_k08.b1 PHD_FILE: MSMg01no140_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:26 2005
         (251 letters)



>mm_chr7_136167578_136168228
          Length = 651

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcatccccccgccagtgtgtttgtaatggagccatcttttaggtatatttttggggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcatccccccgccagtgtgtttgtaatggagccatcttttaggtatatttttggggag 260

                                                                       
Query: 61  ttctgcaccctgctctggaactgaggtgttattaattgacactctgaatcttgatttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgcaccctgctctggaactgaggtgttattaattgacactctgaatcttgatttatc 320

                                                                       
Query: 121 ttattctatattgcatggtcatcggcagctcctctaataagctatggggtacaactgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattctatattgcatggtcatcggcagctcctctaataagctatggggtacaactgtta 380

                                                                       
Query: 181 cctcatctcattggcatggaagagtcttttgttttttaaagagtaagttctggagggata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 cctcatctcattggcatggaagagtcttttgttttttaaagagtaagttctggaggaata 440

                      
Query: 241 gatttcaaggt 251
           |||||||||||
Sbjct: 441 gatttcaaggt 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no140_k08.g1 MSMg01no140_k08.g1 CHROMAT_FILE:
MSMg01no140_k08.g1 PHD_FILE: MSMg01no140_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:26 2005
         (217 letters)



>mm_chr7_136296594_136297210
          Length = 617

 Score =  373 bits (193), Expect = e-108
 Identities = 211/217 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctactcctaccccttctccatcccagagaagagtctgagcatccttgctccttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tctctactcctaccccttctccatcccagagaagagtctgagcatccttgctccttccag 358

                                                                       
Query: 61  caagcgaaaaggaactctgactgccagcatgtagcgcccacatggtcgcaaggagtcaga 120
           ||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct: 357 caagcgaaaaggagctctgactgccagcatgtagtgcccacatgttcccaaggagtcaga 298

                                                                       
Query: 121 gctgtccctaccatcattgccattcctactattcaaacatggtgttttcaagagcatcat 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 297 gctgtccctaccatcattgccattccaactattcaaacatggtgttttcaagagtatcat 238

                                                
Query: 181 cagtcccaggaaggggagtcagtatgattctggtaaa 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 cagtcccaggaaggggagtcagtatgattctggtaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)