BAC Information

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BAC

Clone NameMSMg01-140L02
Chromosome7 (Build37)
Map Location 13,783,107 - 13,783,592
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887
Downstream geneV1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L02.T7 (MSMg01no140_l02.b1)MSMg01-140L02.TJ (MSMg01no140_l02.g1)
ACCAG345762AG345763
length705706
length of high quality
(start - end)
273 (50 - 322)486 (80 - 565)
definitionCHROMAT_FILE: MSMg01no140_l02.b1 PHD_FILE: MSMg01no140_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:30 2005CHROMAT_FILE: MSMg01no140_l02.g1 PHD_FILE: MSMg01no140_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCCATATCTAAATATAGTAAAATCAGTATACAGCAAA
CCAGTAGCCAACATCAAACTAAATGGAGAGAAACCTGAGCAATCCAACTA
AAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTACCTGTTCGATAT
AGTACTCGAAGTTCTAGTCAGAGCAATTAGACAACAAACGGAGGTCAAAG
GGATACAAATTTAAAAGAAGAAGTCAAAATATCACTATTTGCAGATGACA
TGATAGTATACTTAAGTGACCCAAATAATTCCACCAGGGAACGCCTACAG
CTGATAAACAACTTCAGCAAATTGGCTGGATATAAAACTAACTTAAACAA
ATTGGTCGCCTTCCTCTATTCAGAGGATATGTGGTCTGAGAAAGAAATTT
GGGCAATAACACCCTTCACAATAGGCATAAATAATTTAAAATTCCTTGGT
GTGACTCGAATCAAGCAAGTTACAGATCTTTACGACAAGGACTTCCAGTG
TTCTGAAGAATGAATTTGAAGAAGATCTCAGATTATGGAAAGATGCCCTA
TGCTCCTCCCTTGGCCGGACCAACATATTAAAACGGGCCTATTTGCTGGT
AGAATCTATGCAATCCTCATCACAATCCCCCCTTAATTTCTCCCAGGATA
CTACC
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATGCTTAAGTTAGAGACTA
AACCAGGACTACGTGGCAAATACATGCCCCACACCCCCTGCTTCTGTGCT
CTCCTTTGTTGGAGACAATGTCAAAGGACTTGGACAAAGGACGTGATATA
TAAGTGCTTGCTGAGCAACACATGAAACATTGAAAACTGTATTTGTGCTT
TTCCTTAAATCCACCCTGATTCAAAACAAACTGGCTTCAGTGAGTCCAAT
GTCCTGACTACCGTTTCCTACAGGTAAAGCTACCCATGGGAAGGGCAGGT
TCCATTAACAAAGGCACTCAAGTCTCCTGATGTTCGGAGGCCTGACACTC
CAGGGCGGTGGACATCCCTCCACAGCACTCAGGGTTGCCTGATCTTCCTC
AAGTGCCCGTGCTGCTATTCCCCTTTCCTCTGTCTTTCTGACTCCCTGCC
TAAGATGCCACATGTCCTGGAGGCTGGCAGACTCTGATGACTGCCATTGC
CTTGTCTAGGCAGTGGGAAAGATATGGCTGTCTACCTAAAATATAACCCA
GAAAAGAGCCAGTCTTGGCAGAATATTGACCTTGTTTCCTAGATGTGTCC
CCCTGAGAGAGCACTCTGTGACCCATACTCCACAGTGCTTCTCTTCCTTC
TGGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l02.g1 MSMg01no140_l02.g1 CHROMAT_FILE:
MSMg01no140_l02.g1 PHD_FILE: MSMg01no140_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:30 2005
         (486 letters)



>mm_chr7_13782907_13783792
          Length = 886

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatgcttaagttagagactaaaccaggactacgtggcaaatacatgccccacaccccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaatgcttaagttagagactaaaccaggactacgtggcaaatacatgccccacaccccct 627

                                                                       
Query: 61  gcttctgtgctctcctttgttggagacaatgtcaaaggacttggacaaaggacgtgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcttctgtgctctcctttgttggagacaatgtcaaaggacttggacaaaggacgtgatat 567

                                                                       
Query: 121 ataagtgcttgctgagcaacacatgaaacattgaaaactgtatttgtgcttttccttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ataagtgcttgctgagcaacacatgaaacattgaaaactgtatttgtgcttttccttaaa 507

                                                                       
Query: 181 tccaccctgattcaaaacaaactggcttcagtgagtccaatgtcctgactaccgtttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tccaccctgattcaaaacaaactggcttcagtgagtccaatgtcctgactaccgtttcct 447

                                                                       
Query: 241 acaggtaaagctacccatgggaagggcaggttccattaacaaaggcactcaagtctcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acaggtaaagctacccatgggaagggcaggttccattaacaaaggcactcaagtctcctg 387

                                                                       
Query: 301 atgttcggaggcctgacactccagggcggtggacatccctccacagcactcagggttgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgttcggaggcctgacactccagggcggtggacatccctccacagcactcagggttgcc 327

                                                                       
Query: 361 tgatcttcctcaagtgcccgtgctgctattcccctttcctctgtctttctgactccctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgatcttcctcaagtgcccgtgctgctattcccctttcctctgtctttctgactccctgc 267

                                                                       
Query: 421 ctaagatgccacatgtcctggaggctggcagactctgatgactgccattgccttgtctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctaagatgccacatgtcctggaggctggcagactctgatgactgccattgccttgtctag 207

                 
Query: 481 gcagtg 486
           ||||||
Sbjct: 206 gcagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)