Query= MSMg01no141_d08.b1 MSMg01no141_d08.b1 CHROMAT_FILE:
MSMg01no141_d08.b1 PHD_FILE: MSMg01no141_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:20 2005
(701 letters)
>mm_chr7_104790251_104791351
Length = 1101
Score = 870 bits (450), Expect = 0.0
Identities = 462/466 (99%)
Strand = Plus / Minus
Query: 236 atccatgtcctccacttgttaggcaagcactccactaattaagtgtatccctgaatcaag 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 atccatgtcctccacttgttaggcaagcactccactaattaagtgtatccctgaatcaag 1042
Query: 296 tcatttctcttgtctgtcttgagatattgactttctacaaagcctggaactccttgtact 355
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1041 tcatttctcttgtctgtcttgagatagggactttctacaaagcctggatctccttgtact 982
Query: 356 ttcactatgtaaatgaggcaggcttcaaactcacaaagagctgcctgtctctgctgggat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ttcactatgtaaatgaggcaggcttcaaactcacaaagagctgcctgtctctgctgggat 922
Query: 416 taaaagcatgtgctaccatgtagctgaagtgatattcttgaggaagccaaaatacacttt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 taaaagcatgtgctaccatgtagctgaagtgatattcttgaggaagccaaaatacacttt 862
Query: 476 tgatatttaacattcacaaaaagaaagacttagcgggcaagtcagttcacaacatttacc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgatatttaacattcacaaaaagaaagacttagcgggcaagtcagttcacaacatttacc 802
Query: 536 agtagtagtagttcattcagttacaagctagctaaaacaccatgtcccaagcatctcata 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtagtagtagtttattcagttacaagctagctaaaacaccatgtcccaagcatctcata 742
Query: 596 gtaagtatgaatactcccggtaagaaatctgaagaaagctaatgttacccagaaaacata 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtaagtatgaatactcccggtaagaaatctgaagaaagctaatgttacccagaaaacata 682
Query: 656 cactatacaactaggactttacaaagcaagggacttcacaggagcc 701
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactatacaactaggactttacaaagcaagggacttcacaggagcc 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_d08.g1 MSMg01no141_d08.g1 CHROMAT_FILE:
MSMg01no141_d08.g1 PHD_FILE: MSMg01no141_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:21 2005
(623 letters)
>mm_chr7_104631087_104632111
Length = 1025
Score = 1033 bits (534), Expect = 0.0
Identities = 584/604 (96%), Gaps = 12/604 (1%)
Strand = Plus / Plus
Query: 1 cctgagtcatctctgcaggtccagct-ttcttttttttttctttttt-aaaccaaaacaa 58
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 199 cctgagtcatctctgcaggtccagctctttttttttttttcttttttaaaaccaaaacaa 258
Query: 59 aaaccaaggtctcggctggggtcacccacctcaaaggggtggggatgggggattggcaca 118
||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 259 aaaccaaggtctcagctggggtggcccacctcagaggggtggggatgggggattggcaca 318
Query: 119 tgcctttaatcccatcattagggggcagaggaaggtggatttctgtgagtttgaggcacg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgcctttaatcccatcattagggggcagaggaaggtggatttctgtgagtttgaggcacg 378
Query: 179 ctccagagcagcaaggactacacagagaaaccttgtcttggggaaaaacaaaacaaaaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctccagagcagcaaggactacacagagaaaccttgtcttggggaaaaacaaaacaaaaca 438
Query: 239 aaacaaataagacaaggtctcatacagtccaggtgcagtgtcgctaaggttgaattttaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaacaaataagacaaggtctcatacagtccaggtgcagtgtcgctaaggttgaattttaa 498
Query: 299 acctcctgcctccacttcctgttttatgctggggattgaacctagggacttgagcatgtt 358
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acctcctgcctccacttcctggtttatgctggggattgaacctagggacttgagcatgtt 558
Query: 359 aggcaagtactctacaaaccgagctatgttcccagcggccctcgtgtaataactgagcat 418
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 559 aggcaagtactctacaaaccgagctacgttcccagcggccctcgtgta-taactgagcat 617
Query: 419 tggctttaat----atcttacggttcctttttttaatgtagtaagttctggactttttga 474
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 618 tggctttaattaatatcttacggttcctttttt-aatgtagtaagttctggactttttga 676
Query: 475 atgagtcaagggtcaggaagctttccttactggcttttcagtgctcccacatctctgctt 534
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 677 atgagtcaagggtcaggaagctttccttactggcttttcagtgctcccgcatctctgctt 736
Query: 535 tcctttctgggtttcctggctcttcattccaccccttc---tctcttccttcccttcctc 591
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 737 tcctttctgggtttcctggctcttcattccaccccttcctctctcttccttcccttcc-c 795
Query: 592 tctc 595
||||
Sbjct: 796 tctc 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1025
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1015
Effective search space: 622195
Effective search space used: 622195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
