BAC Information

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BAC

Clone NameMSMg01-141F20
Chromosome7 (Build37)
Map Location 133,969,374 - 134,064,375
singlet/doubletdoublet
Overlap gene1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik
Upstream geneD430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa
Downstream geneKctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141F20.T7 (MSMg01no141_f20.b1)MSMg01-141F20.TJ (MSMg01no141_f20.g1)
ACCAG346256AG346257
length1,2171,303
length of high quality
(start - end)		668 (92 - 759)315 (77 - 391)
definitionCHROMAT_FILE: MSMg01no141_f20.b1 PHD_FILE: MSMg01no141_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:40 2005CHROMAT_FILE: MSMg01no141_f20.g1 PHD_FILE: MSMg01no141_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,063,708 - 134,064,375)(133,969,374 - 133,969,688)
sequence
CCAGTTCTNTTNNNTATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTGTGTAGACCAGGCTCGTTATAGACTGCTGGATTAA
ATTCTCTGCTGGGATTAAACCCGTGTACCAACATGCCTGGCTTCTCTTAT
TGCTTAAGATTATTTAGTAATTATTGAAAAGATTTAAGAGTAAGAATATC
CAATGTCCACTAAGGTTTCCTCATACTTGCAATCCTTATTTTCCCCACAA
GCAACCATTGACCAAAATTTTTCTCAAACATTCTACATATACATATATAT
TAATATATACTTTATTTATACGTATATTATACACACATGTTTATTTAATC
ATTTTATTCAACACACACACTGGCATACTGTATGTTTCTTTATGCTGTGT
TGATTCCACTTGCTGTGTCTCAGGCTTCTTTCACACTTGAGTGTGCAGAT
GCGTCTCATCCTATTTAGTAGCTGAATGGTGCTCTAATTGTAGATATAGC
ATGGTTTGCTAGAGGCTCCACTGACAGATCAACTAGGTTGTTTCACGTCT
GTTATACACAGGGCTGCAATAAGCATCTTTGTTATACTTCTCAGAACACA
TGAGTGGGTTTGCCAAAGAAACCTGTAGATGTGGAGGATGCCTCTCAGAG
TGGAGCACTTGTCTGTATGTACAAGCCCTGGCGTCCGTCCACAGTGTAAG
GAAACAGCATCTCCTAAAGGTAGAGTTGCCGAATCAGCGATTACATTAGC
CTCAGTGATTCTCAGCCTGCCCTTGAGAAAGCTTGAGTCTCTGTAAACTC
TTTTCAAGGTTATGAGTGGAATGTCCCACCCTCGCCAGCACAATTATGAG
TAAGCTGGGCCCCATCCAGGTTAGCACTTGTTTCTACCTTACCACACAGG
CTTTTGATTTCCATGTGTTTTTTTTTTTTAAGATTTATTTATTTCATTGA
TTGTGGTAACTTTGTTGCTGGCCCTGTCTTTAAACCCACCCAAATAAGGG
CTTAGCACCCCCCGTTACTAAGGTGTTAAGCCCCCTGTGGTTTTCTGGAA
AATTAACCTTTCGTTCTTCTGCTAAAATTATTCTTTGTTTCTTATACCTT
GGACACTTTCCTATCCCCGTTTTTTTTTTCTTGTTGTTTTTTTTTATTTT
GTAATCTCTCTTTTTTCTTCATTATTTCCTTTTTCTTTCTTGTTTTTCTT
TATTCTTGTTCTCTCTA

TTTTTTGAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCTCTCCTCCTAGGACTTATAGTGAGATCA
CACTCCTCCCCCGAACAGCTCTGCAGGGACCACCTGAGTGTGTTAAGTGC
CTAGAACAATTCTTGGCTCCATCATATTGAGGCTCACCTCTTAGGATCCT
TTTCCATGTGACTTCCCCTTGCTCTCTCCCAACCCCTTCCCCAGCTAAAG
GGTCCCAGAGAAGCTTGGTGCCGGACACCTCCTTCTCACCTATTCTTAGC
TAGAGGTCACCTTTTGGCTCTTGCATTCCCAACCTCAAGTCCGTTCTTGG
CCTTGTTCCACCTTTAATCCTTAGGTAGGTGGGAGGATCAGGGTCAATCT
TTTTTTTTTACCTGTCCTTCCTTCTGACTATCTACTTGCTGAAAGAGCCC
TCTCTTATTCTTCCCCCTCATTTTGTCTACCATCGTCTCATCCCCTTCTA
GTTCTTCACATTTCTGAGTCCTATGGTTTCCCTTCTTCATTGCTTCCCTT
TTTTTGTTTCTGCTTCTTCTTTGAGTTCTTATGTTCCATGCCCTCTTTTT
TGTTGTCTTTATCTTCTATTTTTCTTCTTTGTTCCCTTTTTTCCGTTTTT
TTATTTCCTTTCTTCTTTTCTTCTTGTTTTTTCTTTTCCTCCTCTTTATC
CTTCTTTTTCTTCCTTTTTTTCTTTTTTTTTCTTTCCTGTCTTCCTTCTT
CTTCTTCTTTTTCTTTCTCTCTTTTTTTTCATATCTCTTTTTTCTCTTCA
TCTTCTTTTTTTCTTCTCTTCTCTTTTTCTATTTTCTTTTTTTCTTTTTG
TCTTTTTTCTTTTTTTCTTGTTTTGCCTATTTTTCTTCTCTCTTTTTATT
TCTTTCTTTTCTTTTCTCCTCTCCTCTTTACTTTTTCTTTTTTTCTTTTT
CTTTTTTTTTCTTTTTTCTTTACTTTCTTCCTTCACTTTCTCCTTCTTTC
TTTCTTATTCCTCTCTTTTTCTCCTTTCCTTTCTTCTTTTTTTTTTTTTT
TGCCTTTTTTTTTCTTCTTCTCTTTTCTTCTCTTCCTTTATCCTTTTCTC
TCTATTTCTTTTTTCTTTTTTTCCTTTTGTCTTCCTTTTTTATCTATTTT
CTTTCTTATTCTCTTCTTTCATTTTTCTTCATCCTTTTCTCTTTCTTCTT
TTTTATCCTTTCTTCTTATTCCTATTTCTCTTATCCTCCCTTGTTTCTTT
TTTCTCTCTCTCTTCTTCTCACTTTCTTATATCCTTTTCTTTTCTTTTTT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_f20.b1 MSMg01no141_f20.b1 CHROMAT_FILE:
MSMg01no141_f20.b1 PHD_FILE: MSMg01no141_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:40 2005
         (668 letters)



>mm_chr7_134063557_134064624
          Length = 1068

 Score = 1230 bits (636), Expect = 0.0
 Identities = 660/668 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggattaaattctctgctgggattaaacccgtgtaccaacatgcctggcttctcttatt 60
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 819 ctggattaaattctctgctgggattaaaggtgtgtaccaacatgcctggcttctcttatt 760

                                                                       
Query: 61  gcttaagattatttagtaattattgaaaagatttaagagtaagaatatccaatgtccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gcttaagattatttagtaattattgaaaagatttaagagtaagaatatccaatgtccact 700

                                                                       
Query: 121 aaggtttcctcatacttgcaatccttattttccccacaagcaaccattgaccaaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaggtttcctcatacttgcaatccttattttccccacaagcaaccattgaccaaaatttt 640

                                                                       
Query: 181 tctcaaacattctacatatacatatatattaatatatactttatttatacgtatattata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tctcaaacattctacatatacatatatattaatatatactttatttatacgtatattata 580

                                                                       
Query: 241 cacacatgtttatttaatcattttattcaacacacacactggcatactgtatgtttcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cacacatgtttatttaatcattttattcaacacacacactggcatactgtatgtttcttt 520

                                                                       
Query: 301 atgctgtgttgattccacttgctgtgtctcaggcttctttcacacttgagtgtgcagatg 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 519 atgctgtgttgattccacttgctgtatctcaggcttctttcacacttgagtgtgcagatg 460

                                                                       
Query: 361 cgtctcatcctatttagtagctgaatggtgctctaattgtagatatagcatggtttgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cgtctcatcctatttagtagctgaatggtgctctaattgtagatatagcatggtttgcta 400

                                                                       
Query: 421 gaggctccactgacagatcaactaggttgtttcacgtctgttatacacagggctgcaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaggctccactgacagatcaactaggttgtttcacgtctgttatacacagggctgcaata 340

                                                                       
Query: 481 agcatctttgttatacttctcagaacacatgagtgggtttgccaaagaaacctgtagatg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 339 agcatctttgttatacttctcagaacacatgagtgggtttgccaaagaaacccgtagatg 280

                                                                       
Query: 541 tggaggatgcctctcagagtggagcacttgtctgtatgtacaagccctggcgtccgtcca 600
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 279 tggaggatgcctctcagagtggagcatttgtctgtatgtacaagccctggcgtctgtcca 220

                                                                       
Query: 601 cagtgtaaggaaacagcatctcctaaaggtagagttgccgaatcagcgattacattagcc 660
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 219 cagtgtaaggaaacagcatctcctaaaggtagagttgctgaatcagcgattacattagcc 160

                   
Query: 661 tcagtgat 668
           ||||||||
Sbjct: 159 tcagtgat 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no141_f20.g1 MSMg01no141_f20.g1 CHROMAT_FILE:
MSMg01no141_f20.g1 PHD_FILE: MSMg01no141_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:41 2005
         (315 letters)



>mm_chr7_133969174_133969888
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctaggacttatagtgagatcacactcctcccccgaacagctctgcagggaccacctg 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||
Sbjct: 201 ctcctaggacttatagtgagatcacactcctccccagaacagctctgcagggaggagctg 260

                                                                       
Query: 61  agtgtgttaagtgcctagaacaattcttggctccatcatattgaggctcacctcttagga 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agtgtgttaagtgcctagaacaattcttggctccatcgtattgaggctcacctcttagga 320

                                                                       
Query: 121 tccttttccatgtgacttccccttgctctctcccaaccccttccccagctaaagggtccc 180
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tcctttgccatgtgacttccccttgctctctcccaaccacttccccagctaaagggtccc 380

                                                                       
Query: 181 agagaagcttggtgccggacacctccttctcacctattcttagctagaggtcaccttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaagcttggtgccggacacctccttctcacctattcttagctagaggtcaccttttg 440

                                                                       
Query: 241 gctcttgcattcccaacctcaagtccgttcttggccttgttccacctttaatccttaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcttgcattcccaacctcaagtccgttcttggccttgttccacctttaatccttaggt 500

                          
Query: 301 aggtgggaggatcag 315
           |||||||||||||||
Sbjct: 501 aggtgggaggatcag 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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