Query= MSMg01no141_g18.b1 MSMg01no141_g18.b1 CHROMAT_FILE:
MSMg01no141_g18.b1 PHD_FILE: MSMg01no141_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:48 2005
(281 letters)
>mm_chr7_96809572_96810255
Length = 684
Score = 505 bits (261), Expect = e-147
Identities = 269/273 (98%), Gaps = 3/273 (1%)
Strand = Plus / Minus
Query: 12 ataatattgacagctctggatgccactatgcactgttaaaaaaattaggaacttcccatg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ataatattgacagctctggatgccactatgcactgttaaaaaaattaggaacttcccatg 425
Query: 72 gagtttggagctttgtaggtcactttcacatggcaggaaaactgtgagcccatggtgaca 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagtttggagctttgtaggtcactttcacatggcaggaaaactgtgagcccatggtgaca 365
Query: 132 ggccctacacgacacttctttcctccagccttattcctctgccct---ctcattaataca 188
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 364 ggccctacacgccacttctttcctccagccttattcctctgccctctcctcattaataca 305
Query: 189 atgaagacaactattgccatgctgagagatgtttaaggctggatatctgtggccctctaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgaagacaactattgccatgctgagagatgtttaaggctggatatctgtggccctctaa 245
Query: 249 ttcatgtgctgcagccagactcctgatgtgaca 281
|||||||||||||||||||||||||||||||||
Sbjct: 244 ttcatgtgctgcagccagactcctgatgtgaca 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 684
Length adjustment: 9
Effective length of query: 272
Effective length of database: 675
Effective search space: 183600
Effective search space used: 183600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_g18.g1 MSMg01no141_g18.g1 CHROMAT_FILE:
MSMg01no141_g18.g1 PHD_FILE: MSMg01no141_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:48 2005
(642 letters)
>mm_chr7_96611946_96612987
Length = 1042
Score = 1174 bits (607), Expect = 0.0
Identities = 634/643 (98%), Gaps = 2/643 (0%)
Strand = Plus / Plus
Query: 1 tacttgtctcccccgggtggtggagcaacaagtaaggctgtgaacagacag-aagtcctg 59
||||||||||| | |||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 201 tacttgtctcctctgggtggtggagcaacaagtaaggctgtggacagacagcaa-tcctg 259
Query: 60 ctgtcaaccacaatcttggccttccaagctggaattgtgagaattaaaattctgttcagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtcaaccacaatcttggccttccaagctggaattgtgagaattaaaattctgttcagt 319
Query: 120 aaattgtcctgtctcggtatttttgttatgagaatgggaacagacgttcatcataatgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaattgtcctgtctcggtatttttgttatgagaatgggaacagacgttcatcataatgaa 379
Query: 180 ttcttttgctttggtgctttgggtgttttctgtggcacagaaaataccaagacagagacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcttttgctttggtgctttgggtgttttctgtggcacagaaaataccaagacagagacc 439
Query: 240 gaatctctgggcagcagaggtccctgatctgcagggcaaggggtgattttgctgtgccca 299
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 440 gaatctctgggcagcagaggtccctgatctgcagggcaaggggtgagcttgctgtgccca 499
Query: 300 tcttttgacatccactaactagacaggaagtgtgagtaacagaaggactgtcaaaagcct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 tcttttgacatccactaactagacaggaagtgtgagtaacagaaggactgtcaaaagcgt 559
Query: 360 cttagcttctactagcagttaacagagatgggcagaaagcatcatttccacttcctttaa 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttagcttctactagcggttaacagagatgggcagaaagcatcatttccacttcctttaa 619
Query: 420 atcttcaaaaagatcccctctgaaggatttgggccaggcacatccccaggtctttgtaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atcttcaaaaagatcccctctgaaggatttgggccaggcacatccccaggtctttgtaag 679
Query: 480 gtgtactgcatcaacatccattaaaaataacgaggcagtaactgcaaaagacatgacttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgtactgcatcaacatccattaaaaataacgaggcagtaactgcaaaagacatgacttc 739
Query: 540 atcctggcagcaaatgctccgcaagtgcaaacctgccatctgctaggcagtatgacgagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atcctggcagcaaatgctccgcaagtgcaaacctgccatctgctaggcagtatgacgagt 799
Query: 600 taatacgctcttccttctgaagtcattcagttggatcctcctg 642
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taatacgctcttccttctgaagtcattcagttggatcctcctg 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
