BAC Information

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BAC

Clone NameMSMg01-142A03
Chromosome7 (Build37)
Map Location 107,927,292 - 107,928,013
singlet/doubletsinglet
Overlap geneB930006L02Rik
Upstream geneNeu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, LOC100041204
Downstream geneTnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142A03.T7 (MSMg01no142_a03.b1)MSMg01-142A03.TJ (MSMg01no142_a03.g1)
ACCAG346731AG346732
length1,2281,201
length of high quality
(start - end)		722 (130 - 851)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no142_a03.b1 PHD_FILE: MSMg01no142_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:06 2005CHROMAT_FILE: MSMg01no142_a03.g1 PHD_FILE: MSMg01no142_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATATCNNNNNNGTTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCTTAACAAGAGAATCCCCTTATAGTCCATCGAAGTGTA
GCCGGATCTGCCTCCCTCCCTAGTGCTAGAGTTATAGGTGTGTGACATCA
CACATGGCTTCAATTCCATTTTAGACATTAACCATTCTCTTACTAAATTG
AAGAAAATATGGTTCCAGTAGATTTTTCCTTAATTCTATCAGTATGATTT
ACAAAGAAGCCCAGATTTTATAGTGGCTACCTGTTTCTATTGTTTTATCA
AATGAAATCAGACTACATATTAGATTTCTGTCTTTAAAAATTCTGTACAT
TGTATTTCATTAGAAAACACTTTAATTTAAAGATGAAATAGAGAATTGTG
ACTTCTACTAATCTGACAAAGGGATCTCAATATGGGAGCGGCTTTCACAG
TTAACAGAAAGATCTTTTCATGCTAAAGTTCAACAACTGACTTGTGCCTG
ACTATAAAGGAGATGCTCATTTGCAAAATGTCGAATTCCAACTACCACAG
CACTTATTAGCCCATTAGAATAACTAAGAAAAATGGCTTTTTAGCTCATC
AAAACAGGACAAGGGACTGGAAAGATGGAAACATGCAAGCATGAGGACCC
AAGTCTGATCCTACAAAGCTGGGCATGGCTACACAGGCTCTATAAACCCA
ACACTACAGTCATGGGCAAGTACAGAAGCAAAAGGATCACCAGGGCTTGC
TGGCCACCAGGCTCATTCCAGGTTCAGTGAGAAACCCTGTCTCACACAAA
TGAAGGGGGGAGTGATAGATGGGTAGACCTGAAACCCACACACATGCTTG
GGCATGTGTATCTCCCTCTCCCTCGGCCCATGGGCGGGGAAGACACCCCA
CCAGCCAACTAATTGTTTATCTAGCACATGCTTTTTGCAAAAGATACAAA
AATGTCTTCCTCAAGGTCATAGGGTTTTTTTAAAAAGAAAGGAATAAGTT
TTTATTAAGAGACCCCCCTTAACCCCCAAATTTATTTTTTCCTTTTAAAA
CAAAAAACTCCTCCGCCAGGGAAAAAAAAACTGCGTGCCAAACCCTGAAA
AACCTTAATTTTGATTCCCCGCAACTCCTTTTGTGTATAGGGGGAAAAAC
CAATTTTTTGAAAAAATGTTCCTTTTACCCTTCCTCCTAATTATTATTTT
GTTTCATAAGCCACATTTTCAATATAAA

NNCCGGAGAAGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTATAGTTCCCTCTGAGCCCCATTTTTAAATGGG
GTTACCTTATTTTCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTGG
ATATTAGTCTCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGTCTTGTTGACGGTGTCTTTCTGCCCTTGTATTTG
GAGCATAGATATTCAGAATTGATAGTTCATCTTGGAGGATTTTACCTTTG
ATGAGTATGAAGTGCCCCTCCTTGTCTTTTTTGATGACTTTGGGTTGGAA
GTAGATTTTATTAGATATTAGAATGGCTACTCCAGCTTGTTTCTTCTTAC
CATTTGCTTGGAAAATTGTTTTCCAGCCTTTCATTCTGAGGTAGTGTCTA
TCTTTTTCTCTGAGATGAGTTTCCTGTAAGCAGCAAAATGTTGGGTCCTG
TTTGTGTAGCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAGTTGAGCC
CATTGATATAAAGAGATATTAAGGAAAGGTAATTGTTGCTTCCTGTTATT
TTTGTTGTTAAAGTTGGCGTTTTGTTCTTGTGGCTGTCTTCTTTTAGGTT
TGTTGAGGGATTACCTTCTTGCTTTTTCTAGGATGAGGCTTCCGTCCTTG
TATTGCTTTTTTTTTTTTTTCCTGTATTTTTTTCTTTTCTTTTCTTCTAT
TCTTCTTTATTATATTCCTTTTTTTTTTCTTTTTTCTCCTCTATTTCTTT
CTTTTTCTCCTTTTTTCCTTCATTTCATTTATCTTTCTTTTTCATCTTTT
TTTTTCTTTCTTTTTTTGTTATTTTTCACTCTCCCTTTTTTTATATCTTC
TTATTCTTTTTCTCTATCTTTTTCTTTATCTTTTTTCTTTTTTCTCTTCT
ATCTCTTCTCTTTTCTTTCTCCTTCTATCCTCCTCTTCTCCTGTATTTCT
ATTTTTTTCTCTATTCTTCTTCTATCTCCTCATCTTCTTCTTTTTATTTC
CTTCCTTTTCTTTTCTTTCCTCTCTTTCTATCCTTATTCTTCTCTTTCAT
TCATTTCTCTTACTTCTTTCTTTTCTCAGTCTCCTTTTTTTTTTTCTCTT
TATCCTTCTTTTACTACTCTTTCTTTTCACATCTCTTCTTTTTCATCTCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_a03.b1 MSMg01no142_a03.b1 CHROMAT_FILE:
MSMg01no142_a03.b1 PHD_FILE: MSMg01no142_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:06 2005
         (722 letters)



>mm_chr7_107927092_107928213
          Length = 1122

 Score = 1381 bits (714), Expect = 0.0
 Identities = 720/722 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttataggtgtgtgacatcacacatggcttcaattccattttagacattaaccattctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttataggtgtgtgacatcacacatggcttcaattccattttagacattaaccattctc 260

                                                                       
Query: 61  ttactaaattgaagaaaatatggttccagtagatttttccttaattctatcagtatgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactaaattgaagaaaatatggttccagtagatttttccttaattctatcagtatgatt 320

                                                                       
Query: 121 tacaaagaagcccagattttatagtggctacctgtttctattgttttatcaaatgaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaagaagcccagattttatagtggctacctgtttctattgttttatcaaatgaaatc 380

                                                                       
Query: 181 agactacatattagatttctgtctttaaaaattctgtacattgtatttcattagaaaaca 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agactacatattagatttctgtctttaaaaattctgtacactgtatttcattagaaaaca 440

                                                                       
Query: 241 ctttaatttaaagatgaaatagagaattgtgacttctactaatctgacaaagggatctca 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctttaatttaaagatgaaatagagaattgtgacttctacaaatctgacaaagggatctca 500

                                                                       
Query: 301 atatgggagcggctttcacagttaacagaaagatcttttcatgctaaagttcaacaactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgggagcggctttcacagttaacagaaagatcttttcatgctaaagttcaacaactg 560

                                                                       
Query: 361 acttgtgcctgactataaaggagatgctcatttgcaaaatgtcgaattccaactaccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttgtgcctgactataaaggagatgctcatttgcaaaatgtcgaattccaactaccaca 620

                                                                       
Query: 421 gcacttattagcccattagaataactaagaaaaatggctttttagctcatcaaaacagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacttattagcccattagaataactaagaaaaatggctttttagctcatcaaaacagga 680

                                                                       
Query: 481 caagggactggaaagatggaaacatgcaagcatgaggacccaagtctgatcctacaaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagggactggaaagatggaaacatgcaagcatgaggacccaagtctgatcctacaaagc 740

                                                                       
Query: 541 tgggcatggctacacaggctctataaacccaacactacagtcatgggcaagtacagaagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgggcatggctacacaggctctataaacccaacactacagtcatgggcaagtacagaagc 800

                                                                       
Query: 601 aaaaggatcaccagggcttgctggccaccaggctcattccaggttcagtgagaaaccctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaggatcaccagggcttgctggccaccaggctcattccaggttcagtgagaaaccctg 860

                                                                       
Query: 661 tctcacacaaatgaaggggggagtgatagatgggtagacctgaaacccacacacatgctt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tctcacacaaatgaaggggggagtgatagatgggtagacctgaaacccacacacatgctt 920

             
Query: 721 gg 722
           ||
Sbjct: 921 gg 922


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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