BAC Information

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BAC

Clone NameMSMg01-143C06
Chromosome7 (Build37)
Map Location 80,342,662 - 80,342,916
singlet/doubletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
Downstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143C06.T7 (MSMg01no143_c06.b1)MSMg01-143C06.TJ (MSMg01no143_c06.g1)
ACCAG347569AG347570
length700678
length of high quality
(start - end)
254 (52 - 305)76 (69 - 144)
definitionCHROMAT_FILE: MSMg01no143_c06.b1 PHD_FILE: MSMg01no143_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:36 2005CHROMAT_FILE: MSMg01no143_c06.g1 PHD_FILE: MSMg01no143_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATC
AGAACCTATACCATCTAGAACTCACTCATCATTGCCTGGACTTTCCAGGG
ACATTTCTTCACTGACCATTGACCAGTCTGTAGTGAACAAAAGGATACAA
TGAATTCTGAGGCACCCCTGAGACCTTGAACTCTGCAAGCCAACTGTAAC
GGAGTGGATGGTAGCACCTCTGTGAGCAGACACATCACTCTACTTCCACT
GCAAAGGAAGGCCTTATCCATTCATTTCAACTGCAGTCTTCCATTCGATC
ATGGGCATGAAAGGTATATGTTCGTCTTTCCCCATCCAATCAAATAACCC
CAGGGAGATATGAACTTATTCCCACTGCTGTGTGCTACTAAGTTATGAAG
TCTTCCCTGTCCCCCACTAATGACTCATGTACCTACCTGTAAGTTCACCA
TTGTTTCTCACAGTGTGGAGTTGTTTCTCGAATTATCCCTCTTTCACACC
CTGACAATACTTCAATTAATTTTACTTTACTTTCTTCCCACTTCTTCTTT
TTCTTATATATCCTTCTACAAAAAACTAATTTCTTTTTCCTCTTTCTCCA
CTTTATTTTTACATCACATTCTTATTATTATATTCCACTCCCACTTCCTC
TCTTATTTTATTCACCATAATATTCCCCACATTATCAATTTCTCTTTCTT

CATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCGGTGGATGAAATGCTCTGAGAGTGACAGAAA
TGTACGCTGGACCTGGTTAGCTAGCAGTCTGCAGTCAGGTGTCTTCACGC
TTTCCAGCGTCATGGACAATGTTTGAAAGAGGAGAGACAAACTGTTTGTT
GTGGCCTTGCACCCTGTTTACCCAGTCCCTTGAAAGGCTCTAGGAGGGTA
TTTTTCTTGAATTGTGTTCGCCATAATTCAGAACCCTTCCCCAAAGAATT
TTATACCATATCACTATCAACTTTTTTTATTTTTTTTAACGGCCACATAT
TATTTCCTTTTTGTCTTTTCCAATCTCCCTTTCTCTCTTTTTTAATAACA
TTCATCTCCCCCCACTTACATCCTTTTTGTTTAATCCCCGCTATTCCTCC
TATATTATAATTTACTTTTTTTTTTTCTTTAATTTATAATTTCATCAAAT
CCTCCCCCCCCCCCCCCCTATTTTTTTTCTCCTACCTCTTATATAACCTT
AATCTCATTGACTACCCATGCTATTATATATTATTCATACTTCTACCTTT
TTGCTCTGTTATTTATGTTACAAAATCCCTTCCACCACCTCTTCTCTTTT
TTTTAATTACCTACTTTTTTCTTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_c06.b1 MSMg01no143_c06.b1 CHROMAT_FILE:
MSMg01no143_c06.b1 PHD_FILE: MSMg01no143_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:36 2005
         (254 letters)



>mm_chr7_80342462_80343116
          Length = 655

 Score =  462 bits (239), Expect = e-135
 Identities = 251/255 (98%), Gaps = 1/255 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacctata-ccatctagaactcactcatcattgcctggactttccagggacatttcttc 59
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacctagaaccatctagaactcactcatcattgcctggactttccagggacatttcttc 260

                                                                       
Query: 60  actgaccattgaccagtctgtagtgaacaaaaggatacaatgaattctgaggcacccctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgaccattgaccagtctgtagtgaacaaaaggatacaatgaattctgaggcacccctg 320

                                                                       
Query: 120 agaccttgaactctgcaagccaactgtaacggagtggatggtagcacctctgtgagcaga 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaccttgaactctgcaagccaaatgtaacggagtggatggtagcacctctgtgagcaga 380

                                                                       
Query: 180 cacatcactctacttccactgcaaaggaaggccttatccattcatttcaactgcagtctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cacatcactctacttccactgcaaaggaaggccttatccattcatttcaactggagtctt 440

                          
Query: 240 ccattcgatcatggg 254
           |||||||||||||||
Sbjct: 441 ccattcgatcatggg 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 655
Length adjustment: 9
Effective length of query: 245
Effective length of database: 646
Effective search space:   158270
Effective search space used:   158270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)