BAC Information

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BAC

Clone NameMSMg01-143J06
Chromosome7 (Build37)
Map Location 64,704,184 - 64,704,298
singlet/doubletsinglet
Overlap geneGabra5
Upstream genep, LOC100040839, Gabrg3
Downstream geneGabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143J06.T7 (MSMg01no143_j06.b1)MSMg01-143J06.TJ (MSMg01no143_j06.g1)
ACCAG347887AG347888
length713742
length of high quality
(start - end)
131 (297 - 427)65 (216 - 280)
definitionCHROMAT_FILE: MSMg01no143_j06.b1 PHD_FILE: MSMg01no143_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005CHROMAT_FILE: MSMg01no143_j06.g1 PHD_FILE: MSMg01no143_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGCCACTACGATCCCAGATTTAATGGCAGAGACGTGCACGCTACA
CAGCTCGAAAGCAATTTTGGATAGAGAAAGGTATTTGACAGCCTAATTTT
TTTCGTCACTAAATTATCTCATACTTGTCAGGCAACCAACTGCAGTGAAA
TTGCTTCTCACACTCAGAGAGGCACACATACCTAACGGAGGCTCCTCACT
CTCTTCGTCATACTATGAGCACTGCACATAAAGTGAAGCCAGCAGGGACA
ATTACTGACCTCAATAGAAATTTGAGATTGTCATGTCCAATTGCTTTGAA
AGTCCTGGAAGAGACTGTCCTGCCAGATTCCTTTAAATGTTCTTGATATT
GTGAAGATGGACCCCACTTTATCCCAGTGTAGATCATTTACTCAGTGTCT
GTCAATATCACTATGCATAACATCACATAACATATTTAAATGCAATTGAC
TGATAGTTAGAATACTCTGGAATAATTATTCTTCCTCAGCTCATAAGCTT
CACATTTAAAACACATTACTTTTAAGAGAACAAACGCTATTCCATTAAAT
GCGCCTTTTATTTGCCTTTCATCTACCGATTTGCCTTAAACAACTCCAGC
TTTCTCCCCCTTTCACCATTATCCTTCTTATGTCACACACACTCGTCAAC
CCTACTCGACTTG
GATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCCCCAGTACTGGGTTGTCTTGTCCAG
CCTTGATATGATGGTATATGTCTGGTCTTATTGCAGCTTGTTATAGCTGT
GTTTACTGATGTCTGTTAAGGTCTACTCTTCTTCTCTGTGGAGAGGGTAA
AGGTAAGGATAAATGCATTATTTCAGTTTTCTTATATCTGTTAATGCTTA
CTTTGTGATCTACAATATGGAAAAATTGAGAGAAGAATACATGACATGAT
GATAAAAGGTATATTCTTTTTTTTAAGNCCCCCCTATACTTCACTCATAT
ACGTTTTTTTTTTTTAGATAGTTTTGCCAGGTCTCGCTCTCCAATTAATA
AAAAGCTGTTACCCCCCCCTTTATTTACATACTTCTCACATTTTCACCTC
TTCATCCTTTATCCTTCACCTACTCTCTCTTCTTCTCTTTTACTCCCTCC
TTTCCCTCTCTCCTTTCTCTCGACCCTTTTCCTTTCCTCATTTCTTTCCA
TCTCCCTTTCTCTCTTTTTTCCCCCTTCCTCCCTTTTTACCCTTTTTCTT
TCTCTTCTCTCTTTCCCCCTATTCCCCCCTTTTTTACCTTATTAACGACC
TTATCACTTTTACACCCTTTATCCTCATACTTTCTCTCCTTGATTTTTTC
TCTTTATTCCCTCTCCCCCTTTTTTTCTCTTTTTCTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_j06.b1 MSMg01no143_j06.b1 CHROMAT_FILE:
MSMg01no143_j06.b1 PHD_FILE: MSMg01no143_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:10 2005
         (131 letters)



>mm_chr7_64703984_64704514
          Length = 531

 Score =  184 bits (95), Expect = 2e-51
 Identities = 110/115 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaattactgacctcaatagaaatttgagattgtcatgtccaattgctttgaaagtcct 60
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gacaattactgacctcaggagaaatttgagattgtcatgtccaattgctttgaaagtcct 256

                                                                  
Query: 61  ggaagagactgtcctgccagattcctttaaatgttcttgatattgtgaagatgga 115
            ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 255 cgaagagactgtcctgtcagattcccttaaatgttcttgatattgtgaagatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)