BAC Information

Click to search

BAC

Clone NameMSMg01-143K22
Chromosome7 (Build37)
Map Location 107,071,475 - 107,071,700
singlet/doubletsinglet
Overlap genenone
Upstream geneUvrag, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1
Downstream geneEG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K22.T7 (MSMg01no143_k22.b1)MSMg01-143K22.TJ (MSMg01no143_k22.g1)
ACCAG347964AG347965
length725726
length of high quality
(start - end)
78 (135 - 212)230 (72 - 301)
definitionCHROMAT_FILE: MSMg01no143_k22.b1 PHD_FILE: MSMg01no143_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:18 2005CHROMAT_FILE: MSMg01no143_k22.g1 PHD_FILE: MSMg01no143_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAAAAACGCGNAANN
CNNGANNNTTCTCCCCTTTTTCTTTTCCTCTCTTCCTTTGTAGGCATGTT
CTCACCATACAACTTGNNNCTGCCCTCATCAGGNCTCTCTGACCAGTCTC
CAAGTATACATATGTCAGGTGCTTGCCTCTCACCTGACTGANATGCTGCG
TTTCTAATTAAATCACCAAANAGTCCGAGTCCTCCAAACTGANTTACATT
TTAAANCTTGTGACATCAACATGGNTTCTCAGTTCTTGAAAGNGAAAACC
AATCCCAAAACCCCCATGTTTTATACTATGCGCCATGCAACCCTTGCNCN
CTAACNNGAANCACCCCACCCCCCCCCCACACACCCCCACTCCCTTTTTT
TTTTTTTTTTTGTTTTCCCCCTTTTTTTTTGTTTTTTTTGGGGGCTGGGG
GGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGCTCNNNNN
NNCACNNNTNTTTTCCTATAACCGACCCTTACANCACNNNCCNNAACNAA
ACCCNNAAAANCCNCCACCTTATTCCTTTTTTTTTTGTTTCTGTTTTTGT
GGGGGGGATGGGGGGGGGGCGTGGGTGTGTGGCTANANAACANNCNCCNN
NCAAAAAAAACCACACCCCAAACACCACACCCAAAAAACACCACAAANAC
CCAACCACCCAACAAACACTTTTTT
GATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGAAATGAAGTGTTCAGGTTTCACTGA
GTTTGAGAGCATCTTGTATGCAGATACGTTAGTAGTTTTTCCATTTTCAA
GGGTAAGCAAACTAAAGAATAAGCCACGCCTTCCCAACATAAACTGTTTT
GCCTCTATTTCAAGGGCCACTGCTCTCAGCAGGAATTATGGGAAAGAACA
CTGTCTACAGTCCTTGGGGTCTCCCTGGGGGGTGGGGTGGGGTACAGAGG
NAAAGNCCAGTGTCTGTTTTTTTCTCTCTGCAGCATCAGCATCTGATTCC
ACACTTGTTGTCTCTGCTGCCCACCCTACTTTCGGTTGTCATTATGTTCC
GATTTAATTTTTTGTGCACACCACCCATATTTTATAATTAAAATTTTCAC
GTCTCACCAGCTCCTGCATATTTAATAAACTAGAGCCGGCTTTTATCTAA
TCACCCCCCTCACTTTTCCTTTCATATTCCAATTTCCCCCAATTTTTTTT
TCCCCCACCCCCTCTTTTTATTTTCTTCCCACCCTTATTCAACCCATAGC
ACGTGGGCTTCCGTTACTTACTACAATTTAACTTTATTTCCCTTTTTCAC
CTTTTTCTTGCTTCCCACATATCCGTTTTACCACACCACCGCCTTCCAAC
ACATACCCTAAGCTCTCGATCGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k22.g1 MSMg01no143_k22.g1 CHROMAT_FILE:
MSMg01no143_k22.g1 PHD_FILE: MSMg01no143_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:18 2005
         (230 letters)



>mm_chr7_107071272_107071901
          Length = 630

 Score =  437 bits (226), Expect = e-127
 Identities = 226/226 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaaatgaagtgttcaggtttcactgagtttgagagcatcttgtatgcagatacgttagta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaaatgaagtgttcaggtttcactgagtttgagagcatcttgtatgcagatacgttagta 263

                                                                       
Query: 64  gtttttccattttcaagggtaagcaaactaaagaataagccacgccttcccaacataaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttttccattttcaagggtaagcaaactaaagaataagccacgccttcccaacataaac 323

                                                                       
Query: 124 tgttttgcctctatttcaagggccactgctctcagcaggaattatgggaaagaacactgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttttgcctctatttcaagggccactgctctcagcaggaattatgggaaagaacactgt 383

                                                         
Query: 184 ctacagtccttggggtctccctggggggtggggtggggtacagagg 229
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctacagtccttggggtctccctggggggtggggtggggtacagagg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)