BAC Information

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BAC

Clone NameMSMg01-144M12
Chromosome7 (Build37)
Map Location 71,881,449 - 71,881,623
singlet/doubletsinglet
Overlap geneApba2
Upstream geneOtud7a, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Downstream gene5730507A09Rik, Ndnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144M12.T7 (MSMg01no144_m12.b1)MSMg01-144M12.TJ (MSMg01no144_m12.g1)
ACCAG348756AG348757
length754823
length of high quality
(start - end)
189 (72 - 260)171 (72 - 242)
definitionCHROMAT_FILE: MSMg01no144_m12.b1 PHD_FILE: MSMg01no144_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:42 2005CHROMAT_FILE: MSMg01no144_m12.g1 PHD_FILE: MSMg01no144_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAACGGATCCGCGG
AATTCATTAATTTTCATGATAGAAAAATATGGGAGGAAAGGGTTTATTTC
AGTTCATAGGCATTTTATTCATTTATTTATTTATTTATTTATTTATTTAT
TCATTCATTTATTTATTTTAAAATTTGTTTACATTTCAAGTGTTTTCCCC
TTTCCCAGTTTCCCTCCCTTCTCGTAATCCCCTATCCCATCCTCCCTTCC
CCTGCTTCTGTGAGGGTGTTCCTCTACCCACCCACCCACTCCCACCTCCC
CTCCCTCAACTCTCCTACTCTGTCTCATCTATCGTGCTTTCATACGATCT
ATGACCTCCTCTCCCCTTGATGTTTGATAAGGTCATCCTCTGCTACATAT
GCTGTTGTTTTTCCCCCCCCCCCCTCAGTTGTTCGTTCATCCCTTGTGAT
TTCCTGTCCCTCTATCTGTTTGATATCGTTGCCCCTTCCTATTGCTCTCC
CCCTCTTTTTTCCCTCCCTTTAATCCTTTCCTTGTTCCATTTCCCCCTCA
CCGCTTTATCCCTTTCCCCCCTTATACTTTTCCGACCCCTTTCCACCCCC
CGGATCCCTTTCTTATATTATCTCTCCCCTTTTTCCTTTCCTTCCTTTAT
CCCCCTTTTATCATATACTCCCTCTCTATTTATCCCTCTTTTTTTCTACT
TTCTCTCTCCCCTTTCTCTTTTTCTTCCTCCTCCCTTTCCTCTTCTTTTT
TTCG
TCGATATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGACGCAATTCCTTCTAAAGGCCCAGAGNACAGAGAGA
AAAGGCAGCTTGCCGTGAAGCCGCCTGGGGTTGTATTGGCCCTCCTTGGC
AGCAAGCAGGGTCCCCTGGCTAATTCTTGCTGGGTTCAGTAACTGTCACC
ACACTCCAGGTATATTCTTGAGGTTGGAGACTCTAGGTCATGGTGTAAAT
GTTCTCAGAGAGTTTTGACTTCTGGTTATCCTTTCCTTTTTGCTTATAGC
TTCACAGCCACATGTACTTTTTTGTTTAGTTCTTCCTAAAACCACGATAG
ATACATCTTATGTATTCCCCCACCTACTTATCTAGTGCTTATTGACTTTC
TTGTCACTCTTGATTTTTTTTCCCCCCCCCCTCTCCTCTTTTTCCCTCTT
TTCTCTCTTTTTTTTCTCCCCTCCCCCCCTTTTTTTTCTTTCATACCCAT
CTGTTTTCCATTCTTTCCCACTTTTCTATTTTTTTTCCTCTCTTTTTCCC
CCTTTCCCTTCCCCTTCTATCCTTCCTTTTTCTTTTTCCACTTTTTTTTC
CTCTTTTCTCCTTTCTCTTCCTTTCTCTTATCTTCCCTCTCTTCCCCCCT
CTTTTCCATTTTTTCCTCTTTTTTCCCTCTCTCTCATCCCTTTTTCCCTT
TTCTTTTTTTCCCCTTTTTCTTCCTTTTTTTTCTCCCTTTCTTTCCCTTC
CTCCTTTTTCTTCTCCCCATTTCTCTTATCCTCCCCCTTCTTTTTTTTTT
CTTTTTTTCCCTCCTTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_m12.g1 MSMg01no144_m12.g1 CHROMAT_FILE:
MSMg01no144_m12.g1 PHD_FILE: MSMg01no144_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:42 2005
         (171 letters)



>mm_chr7_71881260_71881830
          Length = 571

 Score =  298 bits (154), Expect = 1e-85
 Identities = 168/175 (96%), Gaps = 4/175 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttctaaaggcccagagnacagagagaaaaggcagcttgccgtgaagccgcctggggt 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||
Sbjct: 364 tccttctaaaggcccagagcacagagagaaaaggcagcttgccgtgaaggtgcctggggt 305

                                                                       
Query: 61  tgtattggccctccttggcagcaagcagggtcccctggctaattcttgctgggttcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtattggccctccttggcagcaagcagggtcccctggctaattcttgctgggttcagta 245

                                                                  
Query: 121 actgtcaccacactccaggtatattcttgaggttggagac----tctaggtcatg 171
           ||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 244 actgtcaccacactccaggtatattcttgaggttggagactctatctaggtcatg 190


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)