BAC Information

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BAC

Clone NameMSMg01-146M01
Chromosome7 (Build37)
Map Location 60,775,361 - 60,775,526
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620782, LOC100040692, Gm1865, LOC100040718
Downstream geneLOC668789, Mrps33p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146M01.T7 (MSMg01no146_m01.b1)MSMg01-146M01.TJ (MSMg01no146_m01.g1)
ACCAG350206AG350207
length1,1841,361
length of high quality
(start - end)		814 (90 - 903)166 (137 - 302)
definitionCHROMAT_FILE: MSMg01no146_m01.b1 PHD_FILE: MSMg01no146_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:54 2005CHROMAT_FILE: MSMg01no146_m01.g1 PHD_FILE: MSMg01no146_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATTCTTTTNNNNTACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCAATGTAAGAGAAGCACCTGA
AAAAATGTTCTACATCCTTACCCTTCAGGGAAATGCAAACCCCAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGATAAGAAGGACACATGCT
CCACTATGTTCTTAGTAGCCTTATTTATAATAGCCAGAAGCTGGAAATAA
CCCAGATGCCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGCATGAATTTATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGGAACTCACACATTGGTATGAATTGGCTCCTTTCATCTGTTGA
GAAGAGATATAAATTATTATCATTTAACAAATCATGTTTTTGTTTAGTGT
TATGGTTTTTTATTCTTTTTTATTAGATATTTTCTTTATTTACATTTCAA
ATGCTATCCCAAAAATTTCCTATACACTCCCCCCATACTGCTACCCTATC
CACCCACTCCCACTTCTTGGTACTGGCGTTCCCCTGTACTGAGGCATATA
AAGTTTGCAATACCAAGGGACCTCTCTTCCCAATGATGGCCGACTAGGCC
ACCTTCTGCTACATATGGATCTAGACACACAGCTCTGGGCGGACAGGTTA
GTTCAAATTGGTGTTTCACCAAAAGGGTTGCAAACCCCCTTAAGTCCCTT
GGGGGGTTTCCCTAGATTCTCCATTGTGGGCCCCAAAAAAGAATTTGTGC
AACCCTTTTTGTTTTTTTCCTCTCACGTGTTTGTAAATCTCTTTTTTAAA
ATCCCTATTTCTTGGTCCTTTTCCTCAAAATTTCTTGTGTAAAACTTATT
ATAACTCGGTTGTATTTGCTCCATTATTAATTTT

NTTTTAAGATATGAAGCTGCGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTAAACCTGGAAAAAAAAACCCATCTGGGAAAG
CATTGCCTTTGACTGGAATGCACCCACCGCCAGANAGTGCTTAACTCTCA
GCTACTGAAACCCAGGTACAACAGTGACCCAAAAAAATCAGAAAGTAAAA
ACCAGAAATGCAGGCTTACATTTATTGGTAATAAAATGCACTTCTAGTGA
TGCCAAACAGAGCTCAGCTCATACTTTTCAATTAAACACTGTTATTGATA
CACAATGTCGAAAAGTTCCAGCTTATAAAATACAGTTAATGTAAAGTATT
CTATTATGACTCTCAAAATGTTATGTTGATACAAGTCTACTTTTTTTTTT
TTAGACAAAAACAGATTATTCTTCTTAATGATATCTATCCTCCCCCTCAT
TTAAATTCTATTATTTATATATTTATCTTCTTATTTTATATTTTTTTTTA
TTTCTTTATTTGATTATTTCTTTTATTATATTTCTCTAATTTTTTTTTAC
TTTTTCCTATATATATTATTATAATTTTATTATATTATAATAAATTTTTA
TTTTTTAACTTACATTCTTTTTTATATTTTTATTATTATTATTTCTTATT
CTTTTATTATTCTTTATTATATATTTATTTTTTCATTCTTCTTATTTAGT
TCTATTTTATTTAATTCTTTTTTACTTTTTATATCTCTTTATTATATTAT
TTTTTATTATCTTATTTATATATTTTTATTATTTTTAATTTTTTTTTATT
CTTCTTTATATTTTTATATTTTATAATTTTTTCTTTTATTTATATTTATT
TTTATTCTTATCTATTTTATTTTAATATTTATATTATTTTTATATTTTAT
TTTTATTATTTTTTTTTTATTTTTTTATTTTTATTTTATTCTTTTTTCAT
TATTCTTATCTATAATTTTCTTTTATTTATATTAATTATATTACATTTAA
TTTTAATATTATTATTCCTCTTTTTATTTTTTTTTCTTTTTTTTTTCATT
TTATTTTTATTTTATTTTTATTTTATATTATTATTATTATTTTTTTTATT
AATATTCTTTATTTCATTAATTTTTAATTCATTACCTTTTTTTCTCATTT
ACTATTTTATTTATTTATATTATTTTTCTTTATTTATATATCTAATTATA
TTTTTTATCTTTTTTTATTTTTAACTTATTTTAATTTATTTTTTCATTAC
ATTCATTTTTACATTTATATATTTTTCTCTTTATATTTTTATTCTTATAG
TCTTATTTCATTTTAAATTATTATTTTTATCTTATCTTACATTTTTTTCC
TTATTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_m01.g1 MSMg01no146_m01.g1 CHROMAT_FILE:
MSMg01no146_m01.g1 PHD_FILE: MSMg01no146_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:54 2005
         (166 letters)



>mm_chr7_60775161_60775726
          Length = 566

 Score =  306 bits (158), Expect = 6e-88
 Identities = 164/166 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcttaactctcagctactgaaacccaggtacaacagtgacccaaaaaaatcagaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgcttaactctcagctactgaaacccaggtacaacagtgacccaaaaaaatcagaaagt 307

                                                                       
Query: 61  aaaaaccagaaatgcaggcttacatttattggtaataaaatgcacttctagtgatgccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaaaccagaaatgcaggcttacatttattggtaataaaatgcacttctagtgatgccaa 247

                                                         
Query: 121 acagagctcagctcatacttttcaattaaacactgttattgataca 166
           ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 246 acagagctcagctcagacttttcaattaaacactggtattgataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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