BAC Information

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BAC

Clone NameMSMg01-147F08
Chromosome7 (Build37)
Map Location 122,118,056 - 122,201,503
singlet/doubletdoublet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik, EG668479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147F08.T7 (MSMg01no147_f08.b1)MSMg01-147F08.TJ (MSMg01no147_f08.g1)
ACCAG350633AG350634
length793730
length of high quality
(start - end)
367 (53 - 419)593 (83 - 675)
definitionCHROMAT_FILE: MSMg01no147_f08.b1 PHD_FILE: MSMg01no147_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:54 2005CHROMAT_FILE: MSMg01no147_f08.g1 PHD_FILE: MSMg01no147_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,201,141 - 122,201,503)(122,118,056 - 122,118,650)
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGAGCATACTCAGAGACCACTGCTGGACCTGTCAGCC
AAGACAGACAACTGTGGGTCAGGACTCACAGCACACAGTCCTGCCCCAGG
GCCTCCCAGCAAGGGAGGGGGGATTGAGGGGGAAGCAGGAAGATAACAGA
GATAAATCTAAATTCATTCGGAGAGCAGTCACACCCAATGACATATTCAC
TGACTTCTTCAACAGCTCATTTGATAATGTTCTCTCTGCACTATTCATTT
TTCTGAAAGATGAAAGCTGGCAGAGGGTCTCATCTGCTCGCTGATGCAGG
GAAAGGATTTGAAATTAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGACCCCACGGAGGTTTCGTCTTTTAT
TTCTTCTCCTCCCCTCCTCTCCTTTCCCCCCTTTTCCTTTCTTCCCCTTC
TCCTACTCACTTATTTCCCTTCTCTTTTATACCCCTCTTCAGATCCTCTC
CCCTTTTTACCCTTCCCCCTTCTCTCTGTTTCTTGCGCATTCCCTCTCCC
TTTTTGCCCCTATAACTCCTTTCACTTTTTAGTTTTTACTTTCCCCTTGC
ACTTTACGTCTCTCGATTTCTCCTCCTTTTCACCCATTTTCTCTCTCCTG
TTCTGCTGCTCCCCGTCTCCTTTTTTTTCGCCCTTTCCGCTTCGTTTCCC
TTATCGCCCATTTTTCTTCTCCTTCGCTCTCGCCTCTTCTTCC
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATCCCTTACCTTCAT
CTATTAATATGTATCACTACAATTCAAGAAGCGCTTTTGTTTCTGTAACC
AAAAAGATTCTTGCAGTGTCTATGTGCATTTTTAAGAATGCTTTTTCTTT
TTCAAAAAACATTATTATTTTCTTATTATTTTATGTTTGGGTATTTTGTC
TGTACACGTGCCTGTACACCACATGTGTATCTGGTGCCTATGGAATCCAG
AATAGGGTCTTAGATCCCCTGGAACTGGAGTTACAGATCATCGTGAGCCA
AGGGGTGGCTGCTGGGAATTGAACCTGGCTTCTCTAGAAGAGAAGGAAGC
ACTCTTAACTACTACTGCCAAGGTAGCCCAATGTGTATATTTTGGTAGAG
GAATGAAAGAGAGTAATTCTAGAACTTTCTCGGAAGGCAGTATAGGGAAT
CATAGGCCTGTTCCATATTTTCCAACAGAGACATCATCTTTGTGTGAAGT
TGTGTGGGAAGAAGAGAGAAAGATCTCCCTCTGAAAGCTTCACACTGTCT
CTCTGATGTGGTACTCACTGGACTGCCCCAGGAGGATATGCGGAGCACTT
TTGCTGTATCAGCTCAGAGGCTGCCACATAATCCAGGCTCATCTTGTAAC
CTTGAACAGTATTTTTTCAATTAATTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_f08.b1 MSMg01no147_f08.b1 CHROMAT_FILE:
MSMg01no147_f08.b1 PHD_FILE: MSMg01no147_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:54 2005
         (367 letters)



>mm_chr7_122200987_122201753
          Length = 767

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagagcatactcagagaccactgctggacctgtcagccaagacagacaactgtg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 gaattccagagcatactcagagaccactgctggacctgtcagccaagacagacagctgtg 458

                                                                       
Query: 65  ggtcaggactcacagcacacagtcctgccccagggcctcccagcaagggaggggggattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggtcaggactcacagcacacagtcctgccccagggcctcccagcaagggaggggggattg 398

                                                                       
Query: 125 agggggaagcaggaagataacagagataaatctaaattcattcggagagcagtcacaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agggggaagcaggaagataacagagataaatctaaattcattcggagagcagtcacaccc 338

                                                                       
Query: 185 aatgacatattcactgacttcttcaacagctcatttgataatgttctctctgcactattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatgacatattcactgacttcttcaacagctcatttgataatgttctctctgcactattc 278

                                                                       
Query: 245 atttttctgaaagatgaaagctggcagagggtctcatctgctcgctgatgcagggaaagg 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 277 atttttctgaaagatgaaagctggcggagggtctcatctgctcgctgatgcagggaaagg 218

                                                                       
Query: 305 atttgaaattaacagagagagagagagagagagagagagagagagagagagagagagaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atttgaaattaacagagagagagagagagagagagagagagagagagagagagagagaga 158

              
Query: 365 gag 367
           |||
Sbjct: 157 gag 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 37
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no147_f08.g1 MSMg01no147_f08.g1 CHROMAT_FILE:
MSMg01no147_f08.g1 PHD_FILE: MSMg01no147_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:54 2005
         (593 letters)



>mm_chr7_122117858_122118850
          Length = 993

 Score = 1100 bits (569), Expect = 0.0
 Identities = 588/595 (98%), Gaps = 2/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatcccttaccttcatctattaatatgtatcactacaattcaagaagcgcttttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cagatcccttaccttcatctattaatatgtatcactacaattcaagaagcgcttttgttt 258

                                                                       
Query: 61  ctgtaaccaaaaagattcttgcagtgtctatgtgcatttttaagaatgctttttcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgtaaccaaaaagattcttgcagtgtctatgtgcatttttaagaatgctttttcttttt 318

                                                                       
Query: 121 caaaaaacattattattttcttattatttta--tgtttgggtattttgtctgtacacgtg 178
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 319 caaaaaacattattattttcttattattttatgtgtttgggtattttgtctgtacacgtg 378

                                                                       
Query: 179 cctgtacaccacatgtgtatctggtgcctatggaatccagaatagggtcttagatcccct 238
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctgtataccacatgtgtacctggtgcctatggaatccagaatagggtcttagatcccct 438

                                                                       
Query: 239 ggaactggagttacagatcatcgtgagccaaggggtggctgctgggaattgaacctggct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaactggagttacagatcatcgtgagccaaggggtggctgctgggaattgaacctggct 498

                                                                       
Query: 299 tctctagaagagaaggaagcactcttaactactactgccaaggtagcccaatgtgtatat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctctagaagagaaggaagcactcttaactactactgccaaggtagcccaatgtgtatat 558

                                                                       
Query: 359 tttggtagaggaatgaaagagagtaattctagaactttctcggaaggcagtatagggaat 418
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 tttggtagaggaatgaaagagagtaattctagaactttctcggatggcagtatagggaat 618

                                                                       
Query: 419 cataggcctgttccatattttccaacagagacatcatctttgtgtgaagttgtgtgggaa 478
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 619 cataggcctgttccatattttccaacagagatatcatctttgtgtgaagttgtgtgggaa 678

                                                                       
Query: 479 gaagagagaaagatctccctctgaaagcttcacactgtctctctgatgtggtactcactg 538
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 gaagagagaaagatctccctctgaaagcttcatactgtctctctgatgtggtactcactg 738

                                                                  
Query: 539 gactgccccaggaggatatgcggagcacttttgctgtatcagctcagaggctgcc 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gactgccccaggaggatatgcggagcacttttgctgtatcagctcagaggctgcc 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)