Query= MSMg01no147_f08.b1 MSMg01no147_f08.b1 CHROMAT_FILE:
MSMg01no147_f08.b1 PHD_FILE: MSMg01no147_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:54 2005
(367 letters)
>mm_chr7_122200987_122201753
Length = 767
Score = 687 bits (355), Expect = 0.0
Identities = 361/363 (99%)
Strand = Plus / Minus
Query: 5 gaattccagagcatactcagagaccactgctggacctgtcagccaagacagacaactgtg 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 gaattccagagcatactcagagaccactgctggacctgtcagccaagacagacagctgtg 458
Query: 65 ggtcaggactcacagcacacagtcctgccccagggcctcccagcaagggaggggggattg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggtcaggactcacagcacacagtcctgccccagggcctcccagcaagggaggggggattg 398
Query: 125 agggggaagcaggaagataacagagataaatctaaattcattcggagagcagtcacaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agggggaagcaggaagataacagagataaatctaaattcattcggagagcagtcacaccc 338
Query: 185 aatgacatattcactgacttcttcaacagctcatttgataatgttctctctgcactattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatgacatattcactgacttcttcaacagctcatttgataatgttctctctgcactattc 278
Query: 245 atttttctgaaagatgaaagctggcagagggtctcatctgctcgctgatgcagggaaagg 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 277 atttttctgaaagatgaaagctggcggagggtctcatctgctcgctgatgcagggaaagg 218
Query: 305 atttgaaattaacagagagagagagagagagagagagagagagagagagagagagagaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atttgaaattaacagagagagagagagagagagagagagagagagagagagagagagaga 158
Query: 365 gag 367
|||
Sbjct: 157 gag 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 37
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_f08.g1 MSMg01no147_f08.g1 CHROMAT_FILE:
MSMg01no147_f08.g1 PHD_FILE: MSMg01no147_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:54 2005
(593 letters)
>mm_chr7_122117858_122118850
Length = 993
Score = 1100 bits (569), Expect = 0.0
Identities = 588/595 (98%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 cagatcccttaccttcatctattaatatgtatcactacaattcaagaagcgcttttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cagatcccttaccttcatctattaatatgtatcactacaattcaagaagcgcttttgttt 258
Query: 61 ctgtaaccaaaaagattcttgcagtgtctatgtgcatttttaagaatgctttttcttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgtaaccaaaaagattcttgcagtgtctatgtgcatttttaagaatgctttttcttttt 318
Query: 121 caaaaaacattattattttcttattatttta--tgtttgggtattttgtctgtacacgtg 178
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 caaaaaacattattattttcttattattttatgtgtttgggtattttgtctgtacacgtg 378
Query: 179 cctgtacaccacatgtgtatctggtgcctatggaatccagaatagggtcttagatcccct 238
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctgtataccacatgtgtacctggtgcctatggaatccagaatagggtcttagatcccct 438
Query: 239 ggaactggagttacagatcatcgtgagccaaggggtggctgctgggaattgaacctggct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaactggagttacagatcatcgtgagccaaggggtggctgctgggaattgaacctggct 498
Query: 299 tctctagaagagaaggaagcactcttaactactactgccaaggtagcccaatgtgtatat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctctagaagagaaggaagcactcttaactactactgccaaggtagcccaatgtgtatat 558
Query: 359 tttggtagaggaatgaaagagagtaattctagaactttctcggaaggcagtatagggaat 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 tttggtagaggaatgaaagagagtaattctagaactttctcggatggcagtatagggaat 618
Query: 419 cataggcctgttccatattttccaacagagacatcatctttgtgtgaagttgtgtgggaa 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 619 cataggcctgttccatattttccaacagagatatcatctttgtgtgaagttgtgtgggaa 678
Query: 479 gaagagagaaagatctccctctgaaagcttcacactgtctctctgatgtggtactcactg 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 gaagagagaaagatctccctctgaaagcttcatactgtctctctgatgtggtactcactg 738
Query: 539 gactgccccaggaggatatgcggagcacttttgctgtatcagctcagaggctgcc 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gactgccccaggaggatatgcggagcacttttgctgtatcagctcagaggctgcc 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|