BAC Information

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BAC

Clone NameMSMg01-147F19
Chromosome7 (Build37)
Map Location 107,636,642 - 107,636,867
singlet/doubletsinglet
Overlap genenone
Upstream geneArrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3
Downstream geneUcp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147F19.T7 (MSMg01no147_f19.b1)MSMg01-147F19.TJ (MSMg01no147_f19.g1)
ACCAG350653AG350654
length725729
length of high quality
(start - end)
261 (126 - 386)226 (86 - 311)
definitionCHROMAT_FILE: MSMg01no147_f19.b1 PHD_FILE: MSMg01no147_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:56 2005CHROMAT_FILE: MSMg01no147_f19.g1 PHD_FILE: MSMg01no147_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
GCTGGATGCCCAGCCTAGCCTAGTTGACAACACCAGGTTCCAGTAAGAAA
CTCTGTCCCCAAAATAGGGTGAATGGCTCCTGACCTCTGACCTTCACTCG
TACAAATCCATAAAGAGGGGCTGGAGAGATGGCTCAGCAGCTAAGAGCCC
TTGCTGCTCTTCCAGAGGTCCAAGGTTCAGGTCCCAGCACTCTCACGTGG
CAGCACACAACTGTCTTGTAACCCCAGTTCCAAGTGGGATCCAATGTCCT
CTTTTGACCTCAATGTTTCATGCATGCACATAGTACAAATGTATGAATGC
ATGCATTCTTACGCACACTTAAGAAAAAAAAATAAGTAGAGAGCAAGTTT
TTTCCTCCCACTTGTCATGCTCTCACAGGTACCTGGGATAAAGTTTAAGT
CCCAAATCCTCCCACATGCGAGGTAAGAACCCCACTCCTTCATTTTTTTT
GCTTTGAGGTAAGGCCTCACTATGTACACCTGGATGACCTAAAATTCACT
ATGTAGACCAAATTGGCCTCAATCTCACCAAGACCCACTTGTCTGCCTCT
TCACTTGCCGGGATTAAAGAAATTCACCACCACACACAGACCTTTTTGGT
GCCTTTTATCCCCTAAGCATTTGCCTTAGATTTATTTTACGTGCATGAGT
ATTTCCTTTGCATGCACGGGAACCA
CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGGTCGTCTTCC
CATACAAAAGAGATAGTTAGACAAAAGCAAAATAAATTATCTTGGTTTAA
TGTCCCTCACGGCCTTCCACCCAAAAACCTGTATTTAGAAGATCGTCTTT
CTTTGGACTTCACCAACATATGCAAATCACTCAAACTCCTGGTCTCTCTT
CCCAAAGTTCCTGGGGCCAGAAACTATCCTCTATATTAATTTCTATGTTA
TTAGAAGGGGAGACGATGCTTAGGGAGAAGAGGAGGAGGTGGGACGAACG
GCGAGCAAGAGGAAAAAAGATCTGGGAGGTTGGCACAAGAGGAAAAAAGA
ATATCTGGGAGGTTGAGACGCTCTTTGTTTAGTTTTTGACACAGTCTGAT
GTAGTCCAGACTGGCCTGAACTGACTATGTAGCAGACGATGACCTTGAAC
TACTGATCTTCCTGCCTCTGCCCCTCCAACTACTGAGATTGCCGGAGTGT
GTCACTGAGCCTGCCTCTGAAGGATTTGTATGGAGGAGGATGCTGGCAGT
TGGCGGTTCAGCCTCTCAGAGAAGGGAAGACTGATGAATTGTCCGAGGGA
CCTTGGGCAGGAGGCCAGGCTTCTCTCCCGAGCTCTTCAGTTTGATAGTT
TGCTCTCAGAATCCAACTCGGCGCTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_f19.g1 MSMg01no147_f19.g1 CHROMAT_FILE:
MSMg01no147_f19.g1 PHD_FILE: MSMg01no147_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:56 2005
         (226 letters)



>mm_chr7_107636442_107637067
          Length = 626

 Score =  406 bits (210), Expect = e-118
 Identities = 222/226 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaggtcgtcttcccatacaaaagagatagttagacaaaagcaaaataaattatcttgg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaggtcgtcttcccatacaaaatagatagttagacaaaagcaaaataaattatcttgg 260

                                                                       
Query: 61  tttaatgtccctcacggccttccacccaaaaacctgtatttagaagatcgtctttctttg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tttaatgtccctcaaggccttccacccaaaaacctgtatttagaagatcatctttctttg 320

                                                                       
Query: 121 gacttcaccaacatatgcaaatcactcaaactcctggtctctcttcccaaagttcctggg 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttcaccaacatatgcaagtcactcaaactcctggtctctcttcccaaagttcctggg 380

                                                         
Query: 181 gccagaaactatcctctatattaatttctatgttattagaagggga 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagaaactatcctctatattaatttctatgttattagaagggga 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)