Query= MSMg01no147_j01.b1 MSMg01no147_j01.b1 CHROMAT_FILE:
MSMg01no147_j01.b1 PHD_FILE: MSMg01no147_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:11 2005
(612 letters)
>mm_chr7_137712938_137713949
Length = 1012
Score = 1089 bits (563), Expect = 0.0
Identities = 598/615 (97%), Gaps = 11/615 (1%)
Strand = Plus / Plus
Query: 8 gaattccatctgtatccggagaaaccctaggatttatcaactgtttgaagtacatgcgtt 67
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattccatctgtatcaggagaaaccctaggatttatcaactgtttgaagtacatgcgtt 258
Query: 68 ctagcacatcaaggaaaaagagatttgttttgttgttgttatttttgttttttcgagaca 127
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 259 ctagcacatcaaggaaaaagagatttgttttgttgttgttgtttttgttttttcgagaca 318
Query: 128 gggtttctctggatagccctggctgtcctgaaactcactttgtagaccaggctggcctca 187
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gggtttctctgtatagccctggctgtcctgaaactcactttgtagaccaggctggcctca 378
Query: 188 aactcagaaatctgcctgcctctgcctcccaagtgctgggattaaaggcatgtgccacca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aactcagaaatctgcctgcctctgcctcccaagtgctgggattaaaggcatgtgccacca 438
Query: 248 cacccggccaaaagagaattttttttttttttt---------acaaataggacaatgtaa 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 cacccggccaaaagagaattttttttttttttttttttttttacaaataggacaatgtaa 498
Query: 299 ttgatttattaagatatccacaaagcccactaggttacaaacagtgctctcccagggcag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgatttattaagatatccacaaagcccactaggttacaaacagtgctctcccagggcag 558
Query: 359 gtagggctgagaaacctccctgtgcctctgtcctatcatggatggagttgttcccatgta 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtagggctgagaaaactccctgtgcctctgtcctatcatggatggagttgttcccatgta 618
Query: 419 gctgcttcatctctgctctgcagttcccttcttccccacgcctgcacagcctggactccc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctgcttcatctctgctctgcagttcccttcttccccacgcctgcacagcctggactccc 678
Query: 479 agtctgaggctgcagtggcatcctccacctgacttacccatgtgaggccctgcacagctg 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtctgaggctgcagcggcatcctccacctgacttacccatgtgaggccctgcacagctg 738
Query: 539 ttctcttccacacttc-ttgtccccatgcatagccttggctcctgtgtaagttctactcc 597
|||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 ttctcttccacacttcgtt-tccccatgcatagccttggctcctgtgtaagttctattcc 797
Query: 598 tcatcattgagacag 612
|||||||||||||||
Sbjct: 798 tcatcattgagacag 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_j01.g1 MSMg01no147_j01.g1 CHROMAT_FILE:
MSMg01no147_j01.g1 PHD_FILE: MSMg01no147_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:11 2005
(576 letters)
>mm_chr7_137794140_137795115
Length = 976
Score = 1106 bits (572), Expect = 0.0
Identities = 575/576 (99%)
Strand = Plus / Minus
Query: 1 caggccagcctggtctattcaataaaatccctaagaaaggaatggcacttatctcaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caggccagcctggtctattcaataaaatccctaagaaaggaatggcacttatctcaccat 717
Query: 61 gggtcatggctaagcaggaggtaggtatcatatgtatacaggaaagtggcccccaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gggtcatggctaagcaggaggtaggtatcatatgtatacaggaaagtggcccccaaaaaa 657
Query: 121 ctatatttatagctgtctccctagatctttctggctgcctctttgggcaggccagaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctatatttatagctgtctccctagatctttctggctgcctctttgggcaggccagaacca 597
Query: 181 acacccttctaacttgcttgagctgagaacaggcacccatcccaggagcaatgagctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 acacccttctaacttgcttgagctgagaacaggcacccatcccaggagcaatgagctgaa 537
Query: 241 ggccgggcagaagcctccagtatttttatgtagacaggagacaactttgaaatgaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggccgggcagaagcctccagtatttttatgtagacaggagacaactttgaaatgaacaaa 477
Query: 301 caaattaagaatttatcagaatcacaggttttctctggttctaaaaccacaccagcaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caaattaagaatttatcagaatcacaggttttctctggttctaaaaccacaccagcaata 417
Query: 361 aaattacttggttttctccttgtcacacaagaaggtcccatccttaagtgaagtaaatac 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 416 aaattacttggttttctccttgtcacacaagaaggttccatccttaagtgaagtaaatac 357
Query: 421 ttctccgagagacgagagggcctattccctgacccagcaaggagccgctggggaaatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttctccgagagacgagagggcctattccctgacccagcaaggagccgctggggaaatgtt 297
Query: 481 ctacggaactctgagtgatgagctcagagaaatatgaggcagggtcttgtcagacttcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctacggaactctgagtgatgagctcagagaaatatgaggcagggtcttgtcagacttcaa 237
Query: 541 ggacagactttgagcaggcagatcacaggacatcct 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggacagactttgagcaggcagatcacaggacatcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
