Query= MSMg01no147_p13.b1 MSMg01no147_p13.b1 CHROMAT_FILE:
MSMg01no147_p13.b1 PHD_FILE: MSMg01no147_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:43 2005
(620 letters)
>mm_chr7_91648177_91649196
Length = 1020
Score = 648 bits (335), Expect = 0.0
Identities = 462/567 (81%), Gaps = 100/567 (17%)
Strand = Plus / Minus
Query: 5 ggaattcttcaggtaactttctctcagataggagaaagg-tttgttgtttttgtttttgt 63
|||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 468 ggaattcttcaggtaattttctctcagataggagaagggttttgttgtttttgtttttgt 409
Query: 64 tttgagttaggaagatcctgtggtccattgtcttttgcatctagtgttagcagatgcagc 123
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 408 tttgagttaggaagatcctgtggtccattgtcttttgcatttagtgttggcagatgcagc 349
Query: 124 tgactttctcataaaaaagataaatagtttcatcccaatttccttgacactttcaaattg 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 348 tgactttctcataaaaaagataaatagtttcatcccaatttccttgaca-tttcaaattg 290
Query: 184 gatgctttgaatgttatttttcctcctggaaaaaatattggtcactaatgtacttatatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gatgctttgaatgttatttttcctcctggaaaaaatattggtcactaatgtacttatatt 230
Query: 244 gtttttattcttttggttcattctcctctctctgtctctctctgtccctctctctgtccc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gtttttattcttttggttcattctcctctctctgtctctctctgtccctctctctgtcc- 171
Query: 304 tctctctgtctctctctgtctctctgtctctgtttctctctgtctctctgtctctgtttc 363
Sbjct: 171 ------------------------------------------------------------ 171
Query: 364 tctcccccactctctgtctctctgtctctctgtctctctgtctctctgtctctctctctc 423
||||||||| ||||||||||||||||||||||||
Sbjct: 170 ---------ctctctgtc------tctctctgtctctctgtctctctg------------ 138
Query: 424 tctctctctctctgtgtgtgtgtgtgtgtgtgtatacatatcttcaaagtgcagagagca 483
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 137 ------tctctctgtgtgtgtgtgtgtgtg----tacatatcttcaaagtgcagagagca 88
Query: 484 gtatttttctgtgaatgatgtttcttccctatcccttctcttttcagtgtttgggattat 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 87 gtatttttctgtgaatgatgtttcttccctatcccttctattttcagtgtttgggattat 28
Query: 544 tctgaacatttgctagagctcagatac 570
|||||||||||||||||||||||||||
Sbjct: 27 tctgaacatttgctagagctcagatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_p13.g1 MSMg01no147_p13.g1 CHROMAT_FILE:
MSMg01no147_p13.g1 PHD_FILE: MSMg01no147_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:43 2005
(643 letters)
>mm_chr7_91508213_91509256
Length = 1044
Score = 667 bits (345), Expect = 0.0
Identities = 363/373 (97%), Gaps = 9/373 (2%)
Strand = Plus / Plus
Query: 1 ttcagatatggaactcagtcctagatcaaattttcttaagcagtccagaaagcaagatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagatatggaactcagtcctagatcaaattttcttaagcagtccagaaagcaagatct 260
Query: 61 g-actgcaggctaagatggaaaactgctgtgtacaccagcccaaaccatgaggaagcaga 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtactgcaggctaagatggaaaactgctgtgtacaccagcccaaaccatgaggaagcaga 320
Query: 120 ggctcacagatgaactcaccccagcacagggagggctcatgggtcttcagcatggggtgg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcacagatgaactcaccccagcacagggagggctcatgggtcttcagcatggggtga 380
Query: 180 ggcaaagcatttctgcctggacttgaaccaacctagagtattcattacagagcctagtct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaaagcatttctgcctggacttgaaccaacctagagtattcattacagagcctagtct 440
Query: 240 tctagaaaccgacaaggatgaacaatggggtttttctctaaagaatgtgagttaaggggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagaaaccgacaaggatgaacaatggggtttttctctaaagaatgtgagttaaggggg 500
Query: 300 taacatttgaaataatttggactttttaattgaaaagtagatgcccc----aacactcta 355
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 taacatttgaaataatttggactttttaattgaaaagtagatg----ttttaacactcta 556
Query: 356 cacattcttttag 368
|||||||||||||
Sbjct: 557 cacattcttttag 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
