BAC Information

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BAC

Clone NameMSMg01-148M08
Chromosome7 (Build37)
Map Location 3,101,485 - 3,102,023
singlet/doubletsinglet
Overlap geneLOC627003
Upstream geneLOC100041028
Downstream geneEG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148M08.T7 (MSMg01no148_m08.b1)MSMg01-148M08.TJ (MSMg01no148_m08.g1)
ACCAG351671AG351672
length710723
length of high quality
(start - end)
539 (67 - 605)342 (79 - 420)
definitionCHROMAT_FILE: MSMg01no148_m08.b1 PHD_FILE: MSMg01no148_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:47 2005CHROMAT_FILE: MSMg01no148_m08.g1 PHD_FILE: MSMg01no148_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCCGCGGAATT
CATGAACTGATCTCTGAGAACTCCAAGACTCTACTCATCACTCCTCTTAA
AGAGCTTTTCTCCTGGGAGATGGGAATATCCTATCTCTGACACTTTCTGT
CAAATCTTTCACTGATTCATCACTTTGTCTGCTCCTCAATTTTATGTGAT
TGGTTGGGATTAAAGGAGAATATTAAATGATACTGGCCAGAGGTAATAAA
GGTGTGTACTGAGGGGGTGTCTATATTTCTGCCAGATCACAGAGACCTAG
AAGATCTTTGGATGTGATCCCTTGTCAAACGGCCATGTTGCTTGATTCAA
ATTCTTCTACAAGATTTTCTTTAACATGTACACTTCTTTATTCAGTATCA
AATCATTTCTTTACCCACCTGAGCTGTAAGTGGGAGTGCATGCATGTGTG
TATGTATTCACTTACAGCTCCTTCAGAAGTTTATTTTCTTAAATAGGAAT
GGGGAGTAGAGAGGTCACAAAAGAGGAAATGAGCTGGCAGTGGTGGTACA
TGGCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTTTGAGTA
TAAGGCCAGCATGGTTTACACACTGAGTTCCAGGACATCCAAAGCTATAC
TGATAAACCTTGTCTCAAAAAAAAAATAAAAAGTGAGGAGTGCAGGTAAA
ACTAATTATG
NNCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGGTTACACAGAGAA
ACCTTGACTACAACACAAACAAAAATTTGTTTTAAATAGTTCTTGCATCC
GACTTAATTCCAGCACTCAGAAGGCAGAAGCAGGCAGATCTCTGTAAGTT
CAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGAGCTACAT
AGGGAAAGGAGACTGTCTCAAAAAAAAAAACAAAAAACAAAAAACAAAAA
AAAAAAACCAAAAAACAAAAAACAAATATTATCAAACAAAAAACCAATTG
TATTATTATGGTTTTTTTTAAAGATGTATTTATGTTAGCATGTGCATGAA
TGTGCAGATACCCAGGATTTTACCACCCCGCCAGGTTGCCCCAAGCTAAG
TTAGAGCTCCTTCAAGAGGATTCTAGAAATCAAATTCAGGTCCTCCTCAA
AAGTAGCAAGGGCTCTTTTTTAACTTCTGAGCAATCTTTACAGTCCAGAT
GAGTATGTGTGTGTGAGAGAGGCTAGTACCTGCCCTTTCTCCATACCAAT
ACCCCGTTTCCTCTTCTTCTCCTATGCGTTAGTTTCTTTCCCCTCCCTCT
TCTCTCGTTTCCCTTCTTCTTGTTTTTCCCTGTCCCCCCCTGCTTTCTCC
GTTTCCTTTTTTTGTCCCTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_m08.b1 MSMg01no148_m08.b1 CHROMAT_FILE:
MSMg01no148_m08.b1 PHD_FILE: MSMg01no148_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:47 2005
         (539 letters)



>mm_chr7_3101285_3102223
          Length = 939

 Score =  872 bits (451), Expect = 0.0
 Identities = 517/539 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaactccaagactctactcatcactcctcttaaagagcttttctcctgggagatgggaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaattccaagactctactcatcactcctcttaaagagcttttctcctgggagatgggaa 260

                                                                       
Query: 61  tatcctatctctgacactttctgtcaaatctttcactgattcatcactttgtctgctcct 120
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcctatctctgacactttccatcaaatctttcactgattcatcactttgtctgctcct 320

                                                                       
Query: 121 caattttatgtgattggttgggattaaaggagaatattaaatgatactggccagaggtaa 180
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 caattttatgtgattgattgggatttaaggagaatattaaatgatactggccagaggtaa 380

                                                                       
Query: 181 taaaggtgtgtactgagggggtgtctatatttctgccagatcacagagacctagaagatc 240
           ||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 381 taaagttgtgtactgagggcgtgtctatattccttccagatcacagagacctagaagatc 440

                                                                       
Query: 241 tttggatgtgatcccttgtcaaacggccatgttgcttgattcaaattcttctacaagatt 300
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 441 tttggatgtgatcccttgtcaaacagtcatgttgcttgattcaaattcttctacaagatt 500

                                                                       
Query: 301 ttctttaacatgtacacttctttattcagtatcaaatcatttctttacccacctgagctg 360
           ||||||| |||||||| ||||||||||||||||||||||||||||||  ||  |||||||
Sbjct: 501 ttctttatcatgtacaattctttattcagtatcaaatcatttctttattcagttgagctg 560

                                                                       
Query: 361 taagtgggagtgcatgcatgtgtgtatgtattcacttacagctccttcagaagtttattt 420
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagtgggagtgtatacatgtgtgtatgtattcacttacagctccttcagaagtttattt 620

                                                                       
Query: 421 tcttaaataggaatggggagtagagaggtcacaaaagaggaaatgagctggcagtggtgg 480
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 621 tcttaaataggaatggggagtagagaggtcacaaaggaggaaatgagatggcagtggtgg 680

                                                                      
Query: 481 tacatggctttaatcccagcacttgggaggcagaggcaggtggatttttgagtataagg 539
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tacatggctttaatcccagcacttgggaggcagaggcaggtggatttctgagtataagg 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)