Query= MSMg01no149_o19.b1 MSMg01no149_o19.b1 CHROMAT_FILE:
MSMg01no149_o19.b1 PHD_FILE: MSMg01no149_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:21 2005
(560 letters)
>mm_chr7_131932862_131933820
Length = 959
Score = 832 bits (430), Expect = 0.0
Identities = 454/462 (98%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 99 cagctggttatctgtagtttggatcagaactctgctggtattaattaaattgtctgtggg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 cagctggttatctgtagtttggatcagaactctgctggtattaattaaattgtctgtggg 900
Query: 159 tagagtaagaaaactacaactttaagaggttttaacccataaaagcatggttcttgtttc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tagagtaagaaaactacaactttaagaggttttaacccataaaagcatggttcttgtttc 840
Query: 219 ttttttattactagagacagaatactgggtcttatgcttgctatgtagacactctgcctc 278
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ttatttattactagagacagaatactgggtcttatgcttgctatgtagacactctgcctc 780
Query: 279 ataactacatccccagccccatatttcatgcttcttttgtgcatccacgaagcacccatt 338
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 agaactacatccccagccccatatttcatgcttcttttgtgcatccacgaagcacccatt 720
Query: 339 ggaggccttgagttgtgttccttggcaggttgttgatgtcattatcatctgtaaaagtaa 398
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 719 ggaggccttgagttgtgttcctttgcaggttgttgatgtcattatcatctgtaaaagt-a 661
Query: 399 aaaaaaaaaaaaaaaaaggaaggaggaagcctgatgaattgggtgctggctctgagacat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaaaaaaaaaaaaaaaaggaaggaggaagcctgatgaattgggtgctggctctgagacat 601
Query: 459 gtcctgtgtactcacatttcaatggtcatagcaagagcatgattcactatcagaaaggtc 518
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 600 gtcctgtgtactcacatttcaatggtcatagcaagagcatgactcactatcagaaaagtc 541
Query: 519 aaacattttatgcaagcatgaataccagcactagaacttgca 560
|| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 540 aagcattttatgcaagcaggaataccagcactagaacttgca 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_o19.g1 MSMg01no149_o19.g1 CHROMAT_FILE:
MSMg01no149_o19.g1 PHD_FILE: MSMg01no149_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:21 2005
(510 letters)
>mm_chr7_131789635_131790544
Length = 910
Score = 874 bits (452), Expect = 0.0
Identities = 487/510 (95%), Gaps = 20/510 (3%)
Strand = Plus / Plus
Query: 1 agctgtggcatcacagttgaccatagcaactgactcagtgttgagatatcacccatcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agctgtggcatcacagttgaccatagcaactgactcagtgttgagatatcagccatcaat 260
Query: 61 acatgaatcagacaggctgagaggaagaggagagaagaggctgaacagaggtcccagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgaatcagacaggctgagaggaagaggagagaagaggctgaacagaggtcccagctg 320
Query: 121 ttgagtgacaagtgacagaagaaagaaagaatgtgatagagagctgggaggcagctctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagtgacaagtgacagaagaaagaaagaatgtgatagagagctgggaggcagctctgt 380
Query: 181 ggataaagcacttgctgtgttaggctaaagactaaaaggtttggatccccaccatccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggataaagcacttgctgtgttaggctaaagactaaaaggtttggatccccaccatccaca 440
Query: 241 taagagttggcattatttgacacctcacctataatcccaacactcagacaggtcatccct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagagtt---------tgacacctcacctataatcccaacactcagacaggtcatccct 491
Query: 301 gggacaggtcatccctagttagctagactagttggatttggggagctcttagttcagtca 360
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gggacaag------ctagttagctagactagttggatttggggagctcttagttcagtca 545
Query: 361 aagaccctgccttcataaatgaagaagagagtaatagagaaagataccaaatattaggct 420
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 546 aagacccttccttcataaatgaaga-----gtaatagagaaagataccaaatattaggct 600
Query: 421 tactcctacacacacatacaggcacacacatgtgcccactcaccagtgtgtctatgccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tactcctacacacacatacaggcacacacatgtgcccactcaccagtgtgtctatgccca 660
Query: 481 ttcaaacacacatatctgtggggacaccac 510
||||||||||||||||||||||||||||||
Sbjct: 661 ttcaaacacacatatctgtggggacaccac 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
