BAC Information

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BAC

Clone NameMSMg01-150B05
Chromosome7 (Build37)
Map Location 36,324,310 - 36,324,628
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik
Downstream geneNudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150B05.T7 (MSMg01no150_b05.b1)MSMg01-150B05.TJ (MSMg01no150_b05.g1)
ACCAG352616
length714736
length of high quality
(start - end)
---319 (80 - 398)
definitionCHROMAT_FILE: MSMg01no150_b05.b1 PHD_FILE: MSMg01no150_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005CHROMAT_FILE: MSMg01no150_b05.g1 PHD_FILE: MSMg01no150_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATACTCCTATTCGCCCCCTGACCTGTAATGCGAGGTGTCTCATGTC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXX
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAAAGAGACAGATGGTTC
CTAGGAGCTCACCGACCAGTCAACCTACTCAAAATGGTGACCTTCACATT
CAGTGAGAGACCCTTTCTCAAGGGAGTCCAAGAGAGAGCCTATGCTGTCT
GGCAATCTTGTGTTGAATTGTGAGAATGCACACGCGGATGTGTATCCATC
CATATGTACGCGACCAAGGTGGACGGCTCCTGAGGGATGTCACCCAGGAT
TTTAGACCCACAGGAACAAGTGCATCCACACAAATAAGCCTGAAGAGGTA
GGGTGGCTTACAGCTACAATCTCAGCAGGACAACTAGGAGGCAGAAGTGC
AGGTTTGAGGTCAGCCTGCACCTTGTCTCCAGAATCAAAATACCAAACAC
ATGGTTGATTTCAGAACGACCACCCATATGTAGGCTCAGGAAAGATTGTG
TGAGGAAAACTCTCTGCTGTGCACAAAATCCATTTTCTTCTTTGCCCCAC
TCTCTTGTGCACCTATAGCATTGCACTCTATAATTCTCTTCTAATGGATT
CCTGTGTACTTATAATGATTCTTGAATGTTCTCATATCCACCGCACTGGA
CTACGTAATACTTTCCCTCTCGATACTTCTATAACCTCCACCATTGCCTG
TTTTCTATATACACCTATTAACGCCTCCACCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_b05.g1 MSMg01no150_b05.g1 CHROMAT_FILE:
MSMg01no150_b05.g1 PHD_FILE: MSMg01no150_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:32 2005
         (319 letters)



>mm_chr7_36324110_36324828
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtaaagagacagatggttcctaggagctcaccgaccagtcaacctactcaaaatggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaaagagacagatggttcctaggagctcaccgaccagtcaacctactcaaaatggtg 260

                                                                       
Query: 61  accttcacattcagtgagagaccctttctcaagggagtccaagagagagcctatgctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttcacattcagtgagagaccctttctcaagggagtccaagagagagcctatgctgtc 320

                                                                       
Query: 121 tggcaatcttgtgttgaattgtgagaatgcacacgcggatgtgtatccatccatatgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcaatcttgtgttgaattgtgagaatgcacacgcggatgtgtatccatccatatgtac 380

                                                                       
Query: 181 gcgaccaaggtggacggctcctgagggatgtcacccaggattttagacccacaggaacaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gcgaccaaggtggacggctcctgagggatgtcacccaggattttagacccacgggaacaa 440

                                                                       
Query: 241 gtgcatccacacaaataagcctgaagaggtagggtggcttacagctacaatctcagcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcatccacacaaataagcctgaagaggtagggtggcttacagctacaatctcagcagg 500

                              
Query: 301 acaactaggaggcagaagt 319
           | |||||||||||||||||
Sbjct: 501 agaactaggaggcagaagt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)