BAC Information

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BAC

Clone NameMSMg01-151B14
Chromosome7 (Build37)
Map Location 131,175,719 - 131,176,092
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneTnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B14.T7 (MSMg01no151_b14.b1)MSMg01-151B14.TJ (MSMg01no151_b14.g1)
ACCAG353357AG353358
length731730
length of high quality
(start - end)
313 (325 - 637)374 (321 - 694)
definitionCHROMAT_FILE: MSMg01no151_b14.b1 PHD_FILE: MSMg01no151_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005CHROMAT_FILE: MSMg01no151_b14.g1 PHD_FILE: MSMg01no151_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGNGAGGNGGGGCGGAA
NTCACAGGATTTTCTATATGAAAGTTAAATTCATATAGCTATGTATAGGT
TTGACACCTACTCTTTAAGCCCTGATATCTGAACTCCCCTAACACTCAGA
AGAAATCATGTTTTGAGACAAGTTCTCACTGTGATTACAGGCTGTCCTGA
AACTTCTGCTTCAGCAAAAGAAATAACAAAATTTCTTCCATACTGCTCTT
TAAAGCCACTAAATCGATTGACCTGTGGTTTCTAGTAGGGGCTAACAAAT
AAAAAGCCCAGAATCAGTAGAGTTTATACCTCATGGAGTTGTTGGCCGGT
GAGGTCTCATTGGCACCACCCATTACAGGATACTCTCAATGATCTTGGTT
ACCATACTGAACGTGATGCTAACCCACTGTGGTTGAAGACACCACGTACT
TAAGTCATAACATGGGGAAATCAAGCTGGTACTCATTTGGAAGCTTCATC
CCTACTGGTTATCTTTCTTAGTGTTCGAAGGAGCTAGGCAAGCTTCCAGA
GGAGGAAAGTACTCTTTAATCTTACCCAGCTATAAATAATATGGGCTACA
ATAATGACCATCCTGGAAAGACATGCACACTAGTGCCATATATTATTGAT
GTCATGAGAATAACCAACCTCTTTCTGATTGGATTTAGATCCTGCTCCAA
AAGTTGAAAGGCATACATGGAACCATCACTG
AATGCAGTGGGAGGCCTGGNGGCCGCCTGGATACCGACCGGAGGTGAACT
ATAGAATTTCCGCAAAAATCACTCTATGGTGTTACAGTGTTTTGGTGTGG
CATAAAAGGTTGTGAGCAGTCAGAAAACATCACAGAGAGGACTCTAAGGC
AAACACAGACTTGGATTTAAGTATCACAAGAGCAGAATTTGGTGTGCACA
GAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATGAAGGTTTTTGAAAG
AAAGGGAGATCTGAAGGTGACCATAGTATAAGTGGTGCAGCAGCAAGGAG
GGGGTCAAATTGTGTGTCTGAAGACGACATTAACCATCACAAAGAGAAAG
AAGTGATTGGAATTTGATGGTAGACATGACAAAGTACCCCCATCATTATT
CTTGAGTACCAGTGACGACTCTTCTCTACTCAGACTTATGGCTATTGGAG
ACTATGAACATGACAGTTACATATTTCTGTGTGCTGTTGCTGAAGGCAGG
AAGACAAGTTGTGTTCAGCACCGTCAGATGTGGACAGCACTCAGCATGGG
GCTGAGCTTTGCTATTGTCTTCAGGTCAAGCCTCATGGCTTGTCTTTCTG
TATAGCAAGTAGCAGCTGAGGGCTCCCAGCCTGAGAACTCATAGTATTAA
TACATCAGATGAAGCACCTACAGCCACACTCACTGGCGGTGTGCAGAGCC
TGGGTATCTCTTCCTCACCAATCCCCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b14.g1 MSMg01no151_b14.g1 CHROMAT_FILE:
MSMg01no151_b14.g1 PHD_FILE: MSMg01no151_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:49 2005
         (374 letters)



>mm_chr7_131175519_131176292
          Length = 774

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacgacattaaccatcacaaagagaaagaagtgattggaatttgatggtagacatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacgacattaaccatcacaaagagaaagaagtgattggaatttgatggtagacatgac 260

                                                                       
Query: 61  aaagtacccccatcattattcttgagtaccagtgacgactcttctctactcagacttatg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aaagtacccccatcattattcttgagtaccagtgatgactcttctctactcagacttatg 320

                                                                       
Query: 121 gctattggagactatgaacatgacagttacatatttctgtgtgctgttgctgaaggcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctattggagactatgaacatgacagttacatatttctgtgtgctgttgctgaaggcagg 380

                                                                       
Query: 181 aagacaagttgtgttcagcaccgtcagatgtggacagcactcagcatggggctgagcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacaagttgtgttcagcaccgtcagatgtggacagcactcagcatggggctgagcttt 440

                                                                       
Query: 241 gctattgtcttcaggtcaagcctcatggcttgtctttctgtatagcaagtagcagctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctattgtcttcaggtcaagcctcatggcttgtctttctgtatagcaagtagcagctgag 500

                                                                       
Query: 301 ggctcccagcctgagaactcatagtattaatacatcagatgaagcacctacagccacact 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ggctcccagcctgagaactcaaagtattaatacatcagatgaagcacctacagtcacact 560

                         
Query: 361 cactggcggtgtgc 374
           ||||||||||||||
Sbjct: 561 cactggcggtgtgc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)