BAC Information

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BAC

Clone NameMSMg01-151F22
Chromosome7 (Build37)
Map Location 134,479,733 - 134,480,047
singlet/doubletsinglet
Overlap genenone
Upstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal
Downstream geneZfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151F22.T7 (MSMg01no151_f22.b1)MSMg01-151F22.TJ (MSMg01no151_f22.g1)
ACCAG353553AG353554
length746817
length of high quality
(start - end)		372 (44 - 415)34 (63 - 96)
definitionCHROMAT_FILE: MSMg01no151_f22.b1 PHD_FILE: MSMg01no151_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:09 2005CHROMAT_FILE: MSMg01no151_f22.g1 PHD_FILE: MSMg01no151_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAA
TTCCAGATCTCCCTCCCTCAGCCTCTCAGGTGGTGTAATAACTGGTGGTG
CCATCATTCCCAGCATGTATTATTCCCTTATTTTGAAGGTTTATTATTTT
TAATCATGTACATGTATGTCTCTGTGTAAGTGCAGGTACCCTCAGAAGTC
AGAGGTGTCACATCCCCTTGGAGGCAAGCTAGAAGCAAGTTGTGAGTTGT
CTAACATGTGTGCAGGAAACTGAACTCAGGTCCCGTGAGCAGCAGTATGT
GTTCCCAACTGCTTAATCATTTTTTCAGGTTACTTATTCCTATTTCCCAA
AGAACTGCCAGGTTTTTCTTAGCATCTTCTTCTATTTAGACTTTCTCTAT
GCTTCTGTCTGCACCCACCCCACAATGTTAGCTTCAGGTCAAGGTTAACT
ACCTGAGATTCATGATGGCAAAGCAGGAGAGAAATGTTGGTATCTTGAAT
GAAACATTTCATCCGTAGGTTCATGTATTTGAACACATGGTCCCCAGCTG
GTGATGTTGTTTACGAAGGATATGAGATATTCAGTAGGTGGGTCCTCATT
GAATGTGTTTGTCCCCTGCCCTATTTTTGTTATATTCTTTCTATCCTTCT
TATACAGTTTTGCCTTTTTTTTTCTTAATTTTTTTCTCATCGTTATCACT
TCTTATGCTCACTGTTATTTTTTTCTCCCTCCTCTTTTTTATTTTT

TGCAGTGGGAGGCCTGGCGGCCGCCTGTACTCACCGTGAGGTGAACTATA
GAATGCCAGAAAAATTCTGGGGGTGGGGGTGGTGGTGCTGGAGAGATGGN
TCAGTGTTTACCATCACTGACTGCTCTTCCAAAGGTCCTGAGTAATGAGA
TCTGACGCCCTCTTCTGTTGCATCTGAAGACTACAACAGTGTACTTATTA
TACAATACAATATTTATCTTAAACACGGCCCCGCTTCTGTATAGGTTGTC
CACCCGTCAATATTATTGACTGATTCTTCCGAACATCCCGATATTAAATC
CTACTTTTTTTTTTGATGTCTCACAATTATTTGCATTGAGATTTGTACCC
ATTTTCTGCCCCTTTTCCATTTCTCTTTTCCCGTACTTACTTATATTAAT
TTTTGGGGGCGCCCCCCCTTTTTTAAAAAATTAGGGGTTTTTTATCTTTA
TTCTCCACATTTACATTCCCTATATATTTTAAGTATTTTATCCTCTTGTT
AATCTTTTCCACTTCATTTTTCTCCTCTTATTTTTTCCTTTTTCTTCCTC
CTACCCCCAGCGTCTTGTTTCTCCCTCTCCAATCTACTTTTCCTCTTTTT
TTTCTTTATCCCCCAATCTCACTTATTCCTTATCCTCAGTCTTATATTCC
TTCTATTACACTATTCAATTTTATACCAATGTCATTTCCTATTTTTTCTT
TTCCTCCTAACCCATTTCCCTCTTCTTTCCTTCTCTTTTTCTCCTCCTTC
TCCCTTTCTCTTCTTCTCTCACTTTGAATCAACTCTTCCTACTTAATACG
CTCTTTATTTAATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_f22.b1 MSMg01no151_f22.b1 CHROMAT_FILE:
MSMg01no151_f22.b1 PHD_FILE: MSMg01no151_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:09 2005
         (372 letters)



>mm_chr7_134479733_134480504
          Length = 772

 Score =  514 bits (266), Expect = e-150
 Identities = 305/322 (94%), Gaps = 7/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagatctccctccctcagcctctcaggtggtgtaataactggtggtgccatca 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggaattccagatctttctccctcagcctctcaggtggtgtaataactggtggtgccatca 256

                                                                       
Query: 64  ttcccagcatgtattattcccttattttgaaggtttattatttttaatcatgtacatgta 123
           ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 255 ttcccagcatgtattatccccatattttgaaggtttattatttttaatcatgtatatgta 196

                                                                       
Query: 124 tgtctctgtgtaagtgcaggtaccctcagaagtcagaggtgtcacatccccttggaggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgtctctgtgtaagtgcaggtaccctcagaagtcagaggtgtcacatccccttggaggca 136

                                                                       
Query: 184 agctagaagcaagttgtgagttgtctaacatgtgtgcaggaaactgaactcaggtcccgt 243
           |||||||||||       ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agctagaagca-------agttgtctaacatgtgtgcaggaaactgaactcaggtcccgt 83

                                                                       
Query: 244 gagcagcagtatgtgttcccaactgcttaatcattttttcaggttacttattcctatttc 303
           ||| ||||||||||||||||||||||  || ||||||| |||||||||||||||||||||
Sbjct: 82  gagtagcagtatgtgttcccaactgcagaagcatttttccaggttacttattcctatttc 23

                                 
Query: 304 ccaaagaactgccaggtttttc 325
           ||||||||||||||||||||||
Sbjct: 22  ccaaagaactgccaggtttttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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