Query= MSMg01no151_j11.b1 MSMg01no151_j11.b1 CHROMAT_FILE:
MSMg01no151_j11.b1 PHD_FILE: MSMg01no151_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:26 2005
(619 letters)
>mm_chr7_121674685_121675701
Length = 1017
Score = 1116 bits (577), Expect = 0.0
Identities = 605/615 (98%), Gaps = 2/615 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgtggcccctgaatcactaatctgctctgacaacagtgataatggcattgtg 64
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcactgtggagtctgaatcactaatctgctctgacaac--tgataatggcattgtg 262
Query: 65 tcccatggagaggaaaacattgaggatcattgcttttctttcttgaaagaattatatgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcccatggagaggaaaacattgaggatcattgcttttctttcttgaaagaattatatgcc 322
Query: 125 gcatctttatttttggctaacaggaagtgctgatttctcaaagagcaaataaaaagtata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcatctttatttttggctaacaggaagtgctgatttctcaaagagcaaataaaaagtata 382
Query: 185 ctaaatgtgcccagctaataatgataatttcacttgtttaaataatgctagttaatattt 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctaaatgtgcccaactaataatgataatttcacttgtttaaataatgctagttaatattt 442
Query: 245 acatattagcctttattattgaccaggcactgtttatttatctttatggatgtgtatgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acatattagcctttattattgaccaggcactgtttatttatctttatggatgtgtatgac 502
Query: 305 aagattgccaccaattctttatagagaaataaatggacttgaagaggttaaatgctaagt 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 503 aagattgccaccaattctttatagagaaagaaatggacttgaagaggttaaatgctaagt 562
Query: 365 gaatacccctatgagttcagatttagaccatgagttgagctgctaagacttgtgtctctg 424
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaatatctttatgagttcagatttagaccatgagttgagctgctaagacttgtgtctctg 622
Query: 425 aactgtattaccccctggtgctgttagaacagatttttttccttagctcttttacatgcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aactgtattaccccctggtgctgttagaacagatttttttccttagctcttttacatgcc 682
Query: 485 ctttcttttaggtagaaattgttacaattcttatgatttatagattcatatgtgtgtata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctttcttttaggtagaaattgttacaattcttatgatttatagattcatatgtgtgtata 742
Query: 545 ttcaatatatattacatttttatattcacatacatatctccatgtaattattattctctg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcaatatatattacatttttatattcacatacatatctccatgtaattattattctctg 802
Query: 605 tgataattacaaata 619
|||||||||||||||
Sbjct: 803 tgataattacaaata 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1017
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1007
Effective search space: 613263
Effective search space used: 613263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_j11.g1 MSMg01no151_j11.g1 CHROMAT_FILE:
MSMg01no151_j11.g1 PHD_FILE: MSMg01no151_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:26 2005
(342 letters)
>mm_chr7_121814311_121815052
Length = 742
Score = 646 bits (334), Expect = 0.0
Identities = 340/342 (99%)
Strand = Plus / Minus
Query: 1 agtattgtctcctcccttcccttgatttaagtcaggatgtctagagttagaaactgaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtattgtctcctcccttcccttgatttaagtcaggatgtctagagttagaaactgaggc 483
Query: 61 aggggggttataggtgtgctagctttacatcagcatcacaaaatacccaagtattgacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aggggggttataggtgtgctagctttacatcagcatcacaaaatacccaagtattgacca 423
Query: 121 agttatgaagaaagacttaccttcagctcccagtttcagaacttcagtctgtggtcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agttatgaagaaagacttaccttcagctcccagtttcagaacttcagtctgtggtcagtt 363
Query: 181 tggttgttttgaagtctgtggtaaggaagtacatctgggcagggaacaggcagtgacaga 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 362 tggttgttttgaagtctgtggtaaggaagtacatctgggcagggagcaggcagtgacaga 303
Query: 241 actattcacctcatggtggcccaaaagcaaaacataggcacgacaagaaggaccacagac 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 302 actattcacctcatggtggcccaaaagcaaaacataggcacgacaggaaggaccacagac 243
Query: 301 ctctccctttcaagaggtgctacaaggatcctctaactaggt 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctctccctttcaagaggtgctacaaggatcctctaactaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
