Query= MSMg01no152_d05.b1 MSMg01no152_d05.b1 CHROMAT_FILE:
MSMg01no152_d05.b1 PHD_FILE: MSMg01no152_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:14 2005
(500 letters)
>mm_chr7_117234539_117235437
Length = 899
Score = 886 bits (458), Expect = 0.0
Identities = 486/496 (97%), Gaps = 3/496 (0%)
Strand = Plus / Plus
Query: 6 ggaattctcacacatatacccccctcagtttttttgagagtttttgttatttcgagacag 65
|||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 ggaattctcacacatacacacccctcagtttttttgag--tttttgttatttcgagacag 263
Query: 66 tagtggttggcat-tcagatgcagatttgaggtgatagaatgatagaagataggcagaga 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagtggttggcatgtcagatgcagatttgaggtgatagaatgatagaagataggcagaga 323
Query: 125 agttgaaaggtgaggtacacacaggaaatctagaacatggggaacagagatttgagcaga 184
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 agttgaaaggtaaggtgcacacaggaaatctggaacatggggaacagagatttgagcaga 383
Query: 185 gtgtcaaggtagagatggctagggaaggaagagttaggcccaagactcgtgaaggtaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtcaaggtagagatggctagggaaggaagagttaggcccaagactcgtgaaggtaaga 443
Query: 245 ggcagaagttgggggtaggggctgacaactgtaaccccagtaagcaggaaactgaggcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcagaagttgggggtaggggctgacaactgtaaccccagtaagcaggaaactgaggcag 503
Query: 305 gaggattactgaaatattccaggccagtatgggaaacagaaagaccctgtctaaatcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaggattactgaaatattccaggccagtatgggaaacagaaagaccctgtctaaatcaca 563
Query: 365 aacacaaaacccaaccagacatagacttgtctgatgaatggaaaattatattccattgca 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 aacacaaaacccaaccagacatagacttgtctgatgaatggaagattatattccattgca 623
Query: 425 aagttttatttgctctcacaaaggaagcttatttgagggttaggctctgtccttagttaa 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagttttatttgctcccacaaaggaagcttatttgagggttaggctctgtccttagttaa 683
Query: 485 gattgccaaatgtaac 500
||||||||||||||||
Sbjct: 684 gattgccaaatgtaac 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_d05.g1 MSMg01no152_d05.g1 CHROMAT_FILE:
MSMg01no152_d05.g1 PHD_FILE: MSMg01no152_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:14 2005
(410 letters)
>mm_chr7_117391578_117392387
Length = 810
Score = 716 bits (370), Expect = 0.0
Identities = 397/406 (97%)
Strand = Plus / Minus
Query: 5 aaagggtggggcactacctaaggaagtgaccagaggatgaacaagacaggctctttctac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aaagggtggggcactacctaaggaagtgaccagaggatgaacaagacaggctctttctaa 751
Query: 65 agtgaaggcctgaccaagggggaagcaggaagagtcttggcaatgaagaggaacagagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agtgaaggcctgaccaagggggaagcaggaagagtcttggcaatgaagaggaacagagaa 691
Query: 125 aaggccaaaacagtcacactgaagcacagttcaaatgtccaccaactgatgaaggtgtga 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 690 aaggccaaaacagtcacactgaagcacagctcaaatgtccaccaactgatgaaggtgtga 631
Query: 185 acaaaacaccgtatgtccatgaaagaatgggaagagtggaactgaaggaagggatttttt 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acaaaacaccgtacgtccatgaaagaatgggaagagtggaactgaaggaagggatttttt 571
Query: 245 tttttaaagaatgcttgttgctcttacttcttgctaggaacccaaatttagctcccagtc 304
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttaaaaagaatgcttgttgctcttacttcttgctaggaacccaaatttagctcccagtc 511
Query: 305 ccatgtcaggtggttcattattggtaacaccaaagccagggttaatctgatgccctctgc 364
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccatgtcaggtggctcataattggtaacaccaaagccagggttaatctgatgccctctgc 451
Query: 365 tggactaaagcatatgcatgtataaatacaggtgggtgcgcgcgca 410
|||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 450 tggactaaagtacatgcatgtataaatacaggtgggtgcgcgcgca 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
