BAC Information

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BAC

Clone NameMSMg01-153F08
Chromosome7 (Build37)
Map Location 121,110,035 - 121,110,478
singlet/doubletsinglet
Overlap geneSpon1
Upstream geneLOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153F08.T7 (MSMg01no153_f08.b1)MSMg01-153F08.TJ (MSMg01no153_f08.g1)
ACCAG354962AG354963
length730912
length of high quality
(start - end)
678 (46 - 723)115 (138 - 252)
definitionCHROMAT_FILE: MSMg01no153_f08.b1 PHD_FILE: MSMg01no153_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:41 2005CHROMAT_FILE: MSMg01no153_f08.g1 PHD_FILE: MSMg01no153_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTGCTTTATTGGCAGAAACCTTACTCAAGAAGGAATAGAAT
GGTAAGACCTCCCAACTAGCCTTTAGAGATGATGGAGGAAATAAAGACCT
CTTAGACTCATTGGAGCTCATGACTACCAGGTTAGCTTCACAGGAAGGTT
TATGAGAGTCCTGTATCCATACGCAAAGATAAAGTAGTTGCCACCTTTAA
AGCATGTGGAAGTATAACCCCTACTAGGAGAGTAGATACAGGAAGGAAAA
CAGAGACTGAAACGTTACTGACAGAGTGAGGAAGCACAAAGACAAACCGG
AGAGAACAGTAGGAACAAAGAAGATGCAGAACAGAGGAAGACTCACCAAA
ATGGCAGGAATAAGTCTTTAACTATCACTGGTAACTTTGAGCTCAGGTCT
CCAAACAAGCAAAATTCATCTAAATGGATAAAAGGTTGACCTAACAACAT
ACTACCTATAATAAACCCACATTACAACTAAATGCACACATACACCCGAA
GAGAAAGGCTGGAAAGCAGGGTACTCAGCACAGGGAAATATAAAGAAAAC
ACAAGTAGCTTTGATTAAATATGCCAAGACAGAAACAGAGACAAAAAAGT
TCTGTAGGGTCAGTTCATCAAAAAGATAAGATTATAAGCCATGATGCACC
TAANATTGAAGCACTCAGTTTCACAAAACN
TTTTTACCCTTTACCNTTCCGCTATCTTTATTCTATTCCTCCTTTAATAA
CACCTCCCTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACCCTGCAAA
ATTATTCTTAAAAAGTGAAGACATAAAGACGTTCTCAGACAAATAAAAAC
TGAGAGGATTTGTTTCGAGTTACAACTGAATTTCTAAAAATGGTTTTTAG
AAGGTGTTCAGAGAGAAGACAAATGATCTAGCTCAGAAGAACATCCGAAA
AGGAATGTGAAGACAAAAATAACCCCTCTTTTTCCTAATTGATCTAACAG
GTGACAACTCGTTCAGAACAAAATCAGCAGTGCACTCGTGTGCGAGTGTG
TGTGTGTCCGCGTGTGTGTGTGCGCTTCCTTTTACCTATTACCTCCAACC
TACCATTCGCTTTTCTCTTTTTCACCCCTCCCCCCCATAATACATTACCT
ATTTTCTACCACCCCCAACTTTTACTTTTCTCTCCCCCATCGTCTACCCC
TTTTCTTCCCTCCTTTTCTCCTCTCATATACCTCCCCCACATTTCTCTTC
ACCATTTTCCCCCTCCCCCATTACTTAACCGCCCCCCCCCACTCACCTAC
ACTTCCATATCACAACTTTCTCCACTTTCCTTATCCCCCTTCTTTTCCAT
TTCCCCCTCTTTTCCCTTCTCTCCTTTCTTATCTCCCCCCTATTTTTATC
TCTTTTTTCTCACCGCAACCTACCACTTATATTTACTTTACTTCTCTTTC
TACACCTCTCGTTCCCATCATATTCCTATTCCTATTCCTACTCTAGTTTT
ATTCTCTTATAAGCACCCGACTTCATCCACCTACCCTACCAATCTATAAT
ATTTATTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_f08.b1 MSMg01no153_f08.b1 CHROMAT_FILE:
MSMg01no153_f08.b1 PHD_FILE: MSMg01no153_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:41 2005
         (678 letters)



>mm_chr7_121110035_121111112
          Length = 1078

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacttgctttattggcagaaaccttactcaagaaggaatagaatggtaagacc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattctcacttggtttattggcagaaaccttactcaagaaggaatagaatggtaagacc 385

                                                                       
Query: 65  tcccaactagcctttagagatgatggaggaaataaagacctcttagactcattggagctc 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcccaaatagcctttagagatgatggaggaaataaagacctcttagactcattggagctc 325

                                                                       
Query: 125 atgactaccaggttagcttcacaggaaggtttatgagagtcctgtatccatacgcaaaga 184
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 324 atgactaccaggttagcttcacaggaaggtttttgagagtcctgtatccagacgcaaaga 265

                                                                       
Query: 185 taaagtagttgccacctttaaagcatgtggaagtataacccctactaggagagtagatac 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaagtagttgccaccttgaaagcatgtggaagtataacccctactaggagagtagatac 205

                                                                       
Query: 245 aggaaggaaaacagagactgaaacgttactgacagagtgaggaagcacaaagacaaaccg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aggaaggaaaacagagactgaaacgttactgacagagtgaggaagcacaaagacaaaccg 145

                                                                       
Query: 305 gagagaacagtaggaacaaagaagatgcagaacagaggaagactcaccaaaatggcagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gagagaacagtaggaacaaagaagatgcagaacagaggaagactcaccaaaatggcagga 85

                                                                       
Query: 365 ataagtctttaactatcactggtaactttgagctcaggtctccaaacaagcaaaattcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  ataagtctttaactatcactggtaactttgagctcaggtctccaaacaagcaaaattcat 25

                                   
Query: 425 ctaaatggataaaaggttgaccta 448
           ||||||||||||||||||||||||
Sbjct: 24  ctaaatggataaaaggttgaccta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)