BAC Information

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BAC

Clone NameMSMg01-153H02
Chromosome7 (Build37)
Map Location 52,307,206 - 52,307,458
singlet/doubletsinglet
Overlap genePrr12
Upstream geneKlk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras
Downstream genePrrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153H02.T7 (MSMg01no153_h02.b1)MSMg01-153H02.TJ (MSMg01no153_h02.g1)
ACCAG355041AG355042
length767831
length of high quality
(start - end)		256 (67 - 322)---
definitionCHROMAT_FILE: MSMg01no153_h02.b1 PHD_FILE: MSMg01no153_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:49 2005CHROMAT_FILE: MSMg01no153_h02.g1 PHD_FILE: MSMg01no153_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCGTTGCATCTCTAGGGGCTGAGGTTCAAATGCACCGGCCTAAGTAAAGC
CAGATGCGTGTACAAACAGGAGTTCAATTCACCCGTGCAAAAGAAAAGGT
CCCGAGTGTGAAGTCCCACTCTAAAAATCTATACACGCTGGGGAAAGCTA
AGTGTGGAGGGGGAGGAGGGTGAAGGGCAGGTGAAGAGTGAGGACACAGA
TTAAACTACAAGAGGCAGGTTTACGGGTGAACACGCGGCTAGCCACGCGT
GCACAGGGCCCACGCTCACTTTCTTAAACACAAACGGGGAAGAGACACGA
CTCTGTTCCAGATAGGTTCCAAATCCGTGGCCTTGCACCAGAGAGCAAAC
TAGCGCGCCATTAACCAGCATTCACAGCTTTGAGTAAGGTGGGGAGTAGA
ATGAGGCGTGTCCCTAATCTCAGGACCCCTCTAACACACAGAAATCCAGC
TTAATAAGGGGTCGGCGTCCCTTGCCCACTCTGCGTTGGGCAATTCTTGA
TATTTTCTCGCGCATTTATTTTTCCTTCCCTTCTGTTACCCCTGTTAATT
ATATTACCTGTTATATTTCGTGCCTCCTTACTCCCTCTTATTAATTTCTG
TCTTCATAATCTCCTCATTACCTTTTTCATCTTCCTAAACCTTATTTTAC
TTTTAATTTAATCACATTCTTCTTCCTATCCCTTCGCTATCTTTTACTTC
TATCTTCCCCCCTCACC

TTTCTTCTCTTTTTTTCCTCATCTTTATCTCCTCCCCTTCTTCCCCTCCC
CTCTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCTCCCCGCAATTCCTTCCAGCCCCGGGAGTCCA
GGACACCGGCTCTCTCCTGCCTCAACTTCGGGATTAAGATCTTTAGTCTG
ATTCTCCACAGCCCTCTCTCATCTCTCCCCATTAGGGAGTTATAGATTCT
ATACTTCCCTTATAATCAACGAGGAGGTGCCCGCTACCCTCCATTGCAAG
GTTCTTAGACTGATTCCATCTCCCCTCCAGTACATGCTTATTTTCCGTCT
TTTTGAGTTAGTCAAGGAACACCGGAGATCCCTGCGCATATACGCCCAAC
GACTTACATGCTCTTCATTTTCTATGTCAACAAATACCCCTTTTCCTTTT
CCTTTTACTTCCCCCCCGCGAAAGCCTCGCCCTGCTTTACACCCTACTCA
CGTTTGTTCCCCCTCCCTCTCCTATTTTCCATGATAATTCATCTTCCCAC
ACACTTTTCTTTTCTTCCCCCTCCCCCATTAACCCCCCCCCCCCCCCCTC
CTGCCCCCCAAACATTCCCACTTTCTTACTCTATTTTCCAATTTCCAATT
TACCTCCCTCTTTTTTTCCCCCCTTTTTTTCTTTTTCTTTCCCCCCCTCC
CCTTTACTTCCTTATCCCTCCTCTTCACTCTCATCCCTCACATGGCCCCC
CTCCCCTCCTTCTTTTTTTTATTATTTATCCGTCCTATCTTATCATCGTT
CCCTATCCATTCAATTATTTTTCATCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_h02.b1 MSMg01no153_h02.b1 CHROMAT_FILE:
MSMg01no153_h02.b1 PHD_FILE: MSMg01no153_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:49 2005
         (256 letters)



>mm_chr7_52307006_52307661
          Length = 656

 Score =  466 bits (241), Expect = e-136
 Identities = 250/253 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctgaggttcaaatgcaccggcctaagtaaagccagatgcgtgtacaaacaggagttca 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ggctgaggttcaaatgcaccggcctaagtgaagccagatgcgtgtacaaacaggagttca 260

                                                                       
Query: 61  attcacccgtgcaaaagaaaaggtcccgagtgtgaagtcccactctaaaaatctatacac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 attcacccgtgcaaaagaaaaggtcccgagtgtgaagtcccactctaaaaatttatacac 320

                                                                       
Query: 121 gctggggaaagctaagtgtggagggggaggagggtgaagggcaggtgaagagtgaggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggggaaagctaagtgtggagggggaggagggtgaagggcaggtgaagagtgaggaca 380

                                                                       
Query: 181 cagattaaactacaagaggcaggtttacgggtgaacacgcggctagccacgcgtgcacag 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 cagattaaactacaagaggcaggttcacgggtgaacacgcggctagccacgcgtgcacag 440

                        
Query: 241 ggcccacgctcac 253
           |||||||||||||
Sbjct: 441 ggcccacgctcac 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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