BAC Information

Click to search

BAC

Clone NameMSMg01-154C07
Chromosome7 (Build37)
Map Location 139,144,075 - 139,305,355
singlet/doubletdoublet
Overlap geneGpr26, Cpxm2
Upstream geneDmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154C07.T7 (MSMg01no154_c07.b1)MSMg01-154C07.TJ (MSMg01no154_c07.g1)
ACCAG355520AG355521
length700703
length of high quality
(start - end)
463 (63 - 525)422 (71 - 492)
definitionCHROMAT_FILE: MSMg01no154_c07.b1 PHD_FILE: MSMg01no154_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:42 2005CHROMAT_FILE: MSMg01no154_c07.g1 PHD_FILE: MSMg01no154_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,304,927 - 139,305,355)(139,144,075 - 139,144,496)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCGAGAGATCCGCGGAATT
CTGGAGCATCCTTGTTCTATATTCTTTGCTTTTGTTTTTGTGTGCATGCA
TATGTGTGTGCATGCCTGTGTGCACATGTCTGATGTCTTCATATCTGATG
GGGTAATGTCTGATGTCTTCCTCAGCCTCCCTTCCCCTTGTTTTCTGAGA
CAGGGTCTCTCTCAAATTGAACCTGGAGCTTGCTAATTCCACCACACTGA
CCAGCCCAAGATCCTCAGGGATCTACCTGTCCTACCTCCCCAGAGCCATG
CCTAACTTTTTATGTAGAATTCTGTGACTCAAAGTCAGGTGACAGTGCTT
GCCTGACAAGTACTTTATTCACTGACCCATCTCCCAGCCATTCTTCTCTT
TGCCTTTTGTGCATTTGTTTCCTGTTCATGCTCGATGCAAGCGCGGCTCC
TTCTAGCGGCATCCATTACAGTTTCCTAACAGGCCTTTCTGCTCACCATT
GCATTGGTGTTAGCGGTTGGTAGGTCCTAAGTTCGGCTGTACGGTGTTCT
CATGCCTGGTAAAGGATAGAAAGAATGAGCTGACTCTGTGTGTGTGTTAC
ATTCCCCCAAACCTGCCATAGTTTCCCTTCTGGCCTTGGGGTCCACATAT
CTAGGCTTCGCGACTGTTTTTTCTGGAACCAATTTTTTTCGTCACCTGTG

CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGTCCTGCTCCCAGATATCAGCACAGACA
GATACTGCTTGTGGAGACAGTTGCTGCCTGACTCAAGGTGATCTATAACA
TCTCCCATCTCCTTCAAAGCAATCTCCTCTTCTGTATGACCTAGTTTTAA
AAATTGGGTTATAAAGACAAATACTCTTGCTAAAATGCCTGGCTCTATGC
CAATATAGTCCTTAGGTATAGCCTCTGACCTTTTGGAGTAGATGATGGGA
GGGGGGGTGGAGCAAGGAGAAAATTGAACAACTAACTCTAACGGTGGCAA
GAGTCAGAGACAGAGACAGAGATACAGAGATACAGAGACATAGACTGAGA
CACACAAGACAAAGACAGAGACAGAGACAAACCGACGTTTTAGCATGCGC
TCTGTTTCCTAGAAGGAAGAAAACAAAGGTATGTGTGTATTATTAAATAC
AGACAGTGTCCCACACACCCCAGATGAGTATTCATGATTAACTGAACCAT
TCTCACAGACAGAGATGAGCAAGCACAACAGCCTTGTTTCTTTGGCATTG
GTGAGTGGCAGATGTTTTCTGAATCTAGACCTCCTGGCTTGTATAACTTT
TCTAACTATTTTCCACAAGGGAAAAGGTTTAAATGGCGGAAATATTAGGG
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_c07.b1 MSMg01no154_c07.b1 CHROMAT_FILE:
MSMg01no154_c07.b1 PHD_FILE: MSMg01no154_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:42 2005
         (463 letters)



>mm_chr7_139304493_139305355
          Length = 863

 Score =  814 bits (421), Expect = 0.0
 Identities = 427/429 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  tgcatatgtgtgtgcatgcctgtgtgcacatgtctgatgtcttcatatctgatggggtaa 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tgcatatgtgtgtgcatgcctgtgtgcacatgtctgatgtcttcatatctgatggggtaa 804

                                                                       
Query: 95  tgtctgatgtcttcctcagcctcccttccccttgttttctgagacagggtctctctcaaa 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgtctgatgtcttcctcagcctcccttccccttgttttctgagacagggtctctctcaaa 744

                                                                       
Query: 155 ttgaacctggagcttgctaattccaccacactgaccagcccaagatcctcagggatctac 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgaacctggagcttgctaattccaccacactgaccagcccaagatcctcagggatctac 684

                                                                       
Query: 215 ctgtcctacctccccagagccatgcctaactttttatgtagaattctgtgactcaaagtc 274
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 683 ctgtcctacctccccagagccatgcctagctttttatgtagaattctgtgactcaaagtc 624

                                                                       
Query: 275 aggtgacagtgcttgcctgacaagtactttattcactgacccatctcccagccattcttc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggtgacagtgcttgcctgacaagtactttattcactgacccatctcccagccattcttc 564

                                                                       
Query: 335 tctttgccttttgtgcatttgtttcctgttcatgctcgatgcaagcgcggctccttctag 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctttgccttttgtgcatttgtttcctgttcatgctcgatgcaagcgcggctccttctag 504

                                                                       
Query: 395 cggcatccattacagtttcctaacaggcctttctgctcaccattgcattggtgttagcgg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 cggcatccattacagtttcctaacaggcctttctgctcaccattgcattggtgttagcgt 444

                    
Query: 455 ttggtaggt 463
           |||||||||
Sbjct: 443 ttggtaggt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no154_c07.g1 MSMg01no154_c07.g1 CHROMAT_FILE:
MSMg01no154_c07.g1 PHD_FILE: MSMg01no154_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:42 2005
         (422 letters)



>mm_chr7_139143875_139144696
          Length = 822

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtcctgctcccagatatcagcacagacagatactgcttgtggagacagttgctgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtcctgctcccagatatcagcacagacagatactgcttgtggagacagttgctgcctg 260

                                                                       
Query: 61  actcaaggtgatctataacatctcccatctccttcaaagcaatctcctcttctgtatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaaggtgatctataacatctcccatctccttcaaagcaatctcctcttctgtatgac 320

                                                                       
Query: 121 ctagttttaaaaattgggttataaagacaaatactcttgctaaaatgcctggctctatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagttttaaaaattgggttataaagacaaatactcttgctaaaatgcctggctctatgc 380

                                                                       
Query: 181 caatatagtccttaggtatagcctctgaccttttggagtagatgatgggagggggggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 caatatagtccttaggtatagcctctgaccttttggagtagatgatgggggggggggtgg 440

                                                                       
Query: 241 agcaaggagaaaattgaacaactaactctaacggtggcaagagtcagagacagagacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaggagaaaattgaacaactaactctaacggtggcaagagtcagagacagagacaga 500

                                                                       
Query: 301 gatacagagatacagagacatagactgagacacacaagacaaagacagagacagagacaa 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gatacagagatacagagacatagacagagacacacaagacaaagacagagacagagacaa 560

                                                                       
Query: 361 accgacgttttagcatgcgctctgtttcctagaaggaagaaaacaaaggtatgtgtgtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accgacgttttagcatgcgctctgtttcctagaaggaagaaaacaaaggtatgtgtgtat 620

             
Query: 421 ta 422
           ||
Sbjct: 621 ta 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)