BAC Information

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BAC

Clone NameMSMg01-154D23
Chromosome7 (Build37)
Map Location 28,331,973 - 28,332,431
singlet/doubletsinglet
Overlap genePld3
Upstream geneNlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4
Downstream gene2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154D23.T7 (MSMg01no154_d23.b1)MSMg01-154D23.TJ (MSMg01no154_d23.g1)
ACCAG355596AG355597
length746728
length of high quality
(start - end)
39 (63 - 101)459 (66 - 524)
definitionCHROMAT_FILE: MSMg01no154_d23.b1 PHD_FILE: MSMg01no154_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:49 2005CHROMAT_FILE: MSMg01no154_d23.g1 PHD_FILE: MSMg01no154_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATATTCTGAGGGGGCGGAATTCCAGCCAG
CCTCCGCTCTCTGGTGAGACCCTGTCAAAAAGAAGGAGGAGAAGAAGAAG
AGAGAAGAACACCAAACACTACGCAATGTATACCATCTAAAACACCCAAT
ACCTAGCCCGTGATTTCCCAAATACACATTCGTATTCTGGAATATACTTT
CTCATAACCTTACTTACCACCACCAACCAGAACCTTTTGCATCTCCCCCC
GCAACATTCCCGCGCCGCTTTTTTAACCTTTGTTTACCAGCCTGCTCGCT
CGAAAAATTCTTTTTTTGCTCTCTACCGCAGAAATCCCCACCCCACTTTT
ATTTTCACTACTACCCCCCCCACAAGTTGGAGATGCGGGTTATATCCCCT
TCAACAGATTCGTGCTATTTTAACCGCCACACCGAAACGACAATTCTATT
TCCACTCTCTCTCTTACACCCCCCCTTTTTTTTTACTTTTGCCCCCGTCG
TATTTTCCTTGCTGTCCCCCCATTCCCCCCTTTTAATTACGTGCACAATG
TGACTGTTCCTCGCCATACTTTTCTTCCCCCCCCCACCTAACACCGGTAG
CAGACTATCTATATCACCTAATTACAATAACCCACGCCCGTCACGATAAC
CCACTAAAAATATCGCCCGGTTATTGTCTCCGTTATTTCACCCACCCAGT
CCCACCAGCCTGTTTGTTATTTGTGTTTAAACACGTTGTTCTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAT
CCACCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGCGTGCGCCACCAC
GCCCGGCTGTGTCGTCTCTTTCAAGGAGCTGTGTGGCCGAGGTGTGAAGG
GTGGTGAGCGAGTAAACTCACGAGCGAGTAAGCTGCCCTGCTCCCTGGGG
GAAGATCTGGTCCAAAATTAAAGGTAAAAGAAAAGGTTCCTGGAAAAGGA
ACAGATTTAGGAGAGATGCTTTTGAGAGCCAGATACATGGTGAGTGGAAG
GTCTGTGGGAACACACCAGGCTATGAAACTTGCAGAGTTGGAGTTCAGAG
ATGAAGAGGAAACTTAAGGGCTCTTTGGAAAGTTAATTGAATGGTATTTG
CTGGGGCAAACATGTGAAGGAACGTACTGTTAAAGTGGACACTGGTGAAA
GACTAAGGCAGACTCATGATGGAACGTTTCACTGAAGTGGACACAGAAGA
TAGGATGTTCTGTTAATACAAGCATGTGAAAGGACTTGTGATGAAGGAAT
CTTCGCTAAGGATATGCATGTTTCGGTCCCCCTTACAGTGTGTAGTTGAG
CTAGCCATACAGAGAAACGTACTATTTGACTCCGGCCGTGTTGCTGTTTC
CTGTTGCTTCAACGACTCTTTCTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_d23.g1 MSMg01no154_d23.g1 CHROMAT_FILE:
MSMg01no154_d23.g1 PHD_FILE: MSMg01no154_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:49 2005
         (459 letters)



>mm_chr7_28331803_28332661
          Length = 859

 Score =  779 bits (403), Expect = 0.0
 Identities = 445/459 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 actctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 570

                                                                       
Query: 61  tgggactaaaggcgtgcgccaccacgcccggctgtgtcgtctctttcaaggagctgtgtg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 tgggactaaaggcgtgcgccaccacgcccagctgtgtcgtctctttcaaggagctgtgtg 510

                                                                       
Query: 121 gccgaggtgtgaagggtggtgagcgagtaaactcacgagcgagtaagctgccctgctccc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 509 gccgaggtgtgaagggtggtgagcgagtaagctcacgagcgagtaagctgccctgctccc 450

                                                                       
Query: 181 tgggggaagatctggtccaaaattaaaggtaaaagaaaaggttcctggaaaaggaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 tgggggaagatctggtccaaaattaaaggtaaaagaaaaggttcctggaaagggaacaga 390

                                                                       
Query: 241 tttaggagagatgcttttgagagccagatacatggtgagtggaaggtctgtgggaacaca 300
           |||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 389 tttaggagagatgctaaggagagccagatacatggtgaatggaaggtctgtgggaacaca 330

                                                                       
Query: 301 ccaggctatgaaacttgcagagttggagttcagagatgaagaggaaacttaagggctctt 360
             |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 329 gtaggctatgaaacttgcagagctggagttcagagatgaagaggaaacttaagggttctt 270

                                                                       
Query: 361 tggaaagttaattgaatggtatttgctggggcaaacatgtgaaggaacgtactgttaaag 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggaaagttagttgaatggtatttgctggggcaaacatgtgaaggaacgtactgttaaag 210

                                                  
Query: 421 tggacactggtgaaagactaaggcagactcatgatggaa 459
           ||||||| |||||||||||||||||||||||||| ||||
Sbjct: 209 tggacacaggtgaaagactaaggcagactcatgaaggaa 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)