Query= MSMg01no154_k08.b1 MSMg01no154_k08.b1 CHROMAT_FILE:
MSMg01no154_k08.b1 PHD_FILE: MSMg01no154_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:20 2005
(515 letters)
>mm_chr7_77809943_77810853
Length = 911
Score = 942 bits (487), Expect = 0.0
Identities = 504/511 (98%), Gaps = 4/511 (0%)
Strand = Plus / Minus
Query: 5 gaattcactggtatccctgaattattaagttaaaagcaaagagacacacatctcttcatt 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcactggtagccttgaattattaagttaaaagcaaagagacacacatctcttcatt 652
Query: 65 aaagtgatctctccacagacactaaatagatctattaggataagtgataacagagcaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 651 aaagtgatctctccacagacactaaatagatctattaggataagtgataac--agcaaaa 594
Query: 125 tgccctccaacaaaaaaacatttttttttgttttcattcataaaactgcaggagcttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgccctccaacaaaaaaacatttttttttgttttcattcataaaactgcaggagcttttt 534
Query: 185 tattttttcagcaaacaaataagagcttagtgaagctgccattttcccacttgaattttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 533 tattttttcagcaaacaaataagagcttagtgaagctgccattttcccacttgaa--ttt 476
Query: 245 tttttttatttgtgaggaaccagatctttacatataggggacacagaatttctacaactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttttttatttgtgaggaaccagatctttacatataggggacacagaatttctacaactt 416
Query: 305 agggtaaatgatgggaagctttatgaaagaaatatataaaaatctctatggacttgcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agggtaaatgatgggaagctttatgaaagaaatatataaaaatctctatggacttgcaca 356
Query: 365 ggtagcagtatactcagactatgggattgtatcatgtgggcctcactctggtccaccagg 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggtagcagtatactcagactataggattgtatcatgtgggcctcactctggtccaccagg 296
Query: 425 taccctgacagatgatggcttggcaaaatttgcccatagatgaaagcgtttctcaagtac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 taccctgacagatgatggcttggcaaaatttgcccatagatgaaagcgtttctcaagtac 236
Query: 485 ctggaccatagggccaggaccactctgaaat 515
|||||||||||||||||||||||||||||||
Sbjct: 235 ctggaccatagggccaggaccactctgaaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 911
Length adjustment: 10
Effective length of query: 505
Effective length of database: 901
Effective search space: 455005
Effective search space used: 455005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_k08.g1 MSMg01no154_k08.g1 CHROMAT_FILE:
MSMg01no154_k08.g1 PHD_FILE: MSMg01no154_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:20 2005
(288 letters)
>mm_chr7_77687237_77687924
Length = 688
Score = 445 bits (230), Expect = e-129
Identities = 272/288 (94%), Gaps = 6/288 (2%)
Strand = Plus / Plus
Query: 1 actgttgtgtggggagaatggaagttttcatggatttttagaaaggcccc---gaaaatg 57
|||||||||||||||||||||||||| || |||||||||||||||| || |||||||
Sbjct: 201 actgttgtgtggggagaatggaagttgtcgtggatttttagaaagg--ccaaagaaaatg 258
Query: 58 gcttatatttatctctgagaacatagtagaattcagattcttgaaggaaacgtcaccaaa 117
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 259 gcttatatttatctctgagaacatagtggaattcagattcttgaaggaaaagtcaccaaa 318
Query: 118 catttacaggtcagactttttacggagaaaacaggaatgcttccatttgacaacaggaag 177
|||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct: 319 catttacaggtcagac-ttttatggagaaaacaggaatacttccattttacaacaggaag 377
Query: 178 gaaagctttcaaagccacgcttataagacatatatatctctaggtaattttataggagct 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaaagctttcaaagccatgcttataagacatatatatctctaggtaattttataggagct 437
Query: 238 caacatgcaacttgactcattgacttttattgataaagagttgggtca 285
|||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 438 caacatgcaacttgacacattgacttttattgataaagagttgtgtca 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
